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48 protocols using ab254360

1

Immunohistochemical Analysis of Inflammatory Markers

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The immunohistochemical experiments were conducted as previously described [25 (link)]. The antibodies used in this study included an anti-Iba1 antibody (1:50; ab178846; ab283319; Abcam, MA, USA), an anti-CD86 antibody (1:200; ab220188; Abcam, MA, USA), anti-IL-1β antibody (1:200; ab254360; Abcam, MA, USA), anti-TNF-α antibody (1:150; ab1793; Abcam, MA, USA), anti-IL-6 antibody (1:200; ab290735; Abcam, MA, USA), anti-ERα antibody (1:200; ab32063; Abcam, MA, USA), anti-GPER antibody (1:200; PA5-77396; Invitrogen, Karlsruhe, Germany), anti-ERβ antibody (1:150; PA1-311; Thermo Fisher Scientific, Shanghai, China), anti-NF-κB p65 antibody (1:200; ab32536; Abcam, MA, USA), anti-COX1 antibody (1:500; ab109025; Abcam, MA, USA), anti-CB1 antibody (1:200; ab3558; Abcam, MA, USA), anti-IL-1 (1:200; ab254360; Abcam, MA, USA), Alexa Fluor 488 secondary antibody (1:1,000; Invitrogen, Karlsruhe, Germany), Alexa Fluor 594 secondary antibody (1:1,000; Invitrogen), and IgG H&L (HRP) antibody (1:500; ab97051; Abcam, MA, USA). The nuclei were stained with DAPI (Sigma-Aldrich, Beijing, China) and images were captured on the LSM700 laser scanning confocal microscope (Zeiss, Tokyo, Japan) with the mean fluorescence intensities (MFI) determined using the FlowJo software [26 (link)].
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2

Western Blot Analysis of Lung Tissue

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Mouse lung tissue and MLE-12 cells were lysed by RIPA lysate. Mouse lung tissue needs to be additionally put into a homogenizer to fully lyse. The protein lysate was then centrifuged (12,000 g, 15 min, 4°C) and the supernatant was collected. After being mixed into the loading buffer, the protein lysate was heated to 100°C for 5 min. Then, we made a 10% sodium dodecyl sulfate polyacrylamide gel and added 10 μL of protein lysate. After electrophoresis and membrane transfer, the protein is transferred to the polyvinylidene fluoride membrane. We used 5% bovine serum albumin-PBS-Tween to block nonspecific antigens for 1 h at room temperature. The membrane was then incubated with primary antibody dilutions (β-actin, ab8226, Abcam, Cambridge, MA, USA; IL-1β, ab254360, Abcam, Cambridge, MA, USA; tumor necrosis factor (TNF), ab1793, Abcam, Cambridge, MA, USA; SOD1, ab51254, Abcam, Cambridge, MA, USA; SOD2, ab68155, Abcam, Cambridge, MA, USA; caspase 3, ab184787, Abcam, Cambridge, MA, USA; p65, ab16502, Abcam, Cambridge, MA, USA; p-p65, ab86299, Abcam, Cambridge, MA, USA; IκBα, ab183503, Abcam, Cambridge, MA, USA;) at 4°C overnight. After washing the membrane, we incubated the membrane at room temperature for 1 h with the secondary antibody dilution (Abcam, Cambridge, MA, USA). Finally, we used chemiluminescent liquid for color development.
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3

Protein Profiling in Brain and Lung Tissues

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Proteins in the brain tissues and lung tissues were harvested by a RIPA buffer (P0013D, Beyotime, China) and their concentrations were qualified with a BCA Kit (pc0020, Solarbio, China). After denaturation, the protein samples were separated by electrophoresis. Proteins in the gel were transferred to a nitrocellulose membrane (10600023, GE Healthcare Life, USA), which was then sealed a 5% skim-milk. After that, they were reacted with primary antibodies at 4 °C overnight. After washing, they were reacted with anti-rabbit HRP (1:5000, #7074, CST, USA) at 37 °C for 1 h. In the end, the protein signals were developed by the ECL reagent (35055, Pierce, USA) in a gel imaging system (A44114, Invitrogen, USA). The primary antibodies of TNF-α (ab205587, 1:1000), IL-1β (ab254360, 1:1000), p-NF-κB (ab76302, 1:1000), NF-κB (1:5000, ab32536), p-IKBα (1:10,000, ab133462), IKBα (1:5000, ab32518), HIF-1α (1:1000, ab179483), and GAPDH (1:5000, ab199554) were obtained from Abcam (UK).
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4

Immunohistochemical Analysis of Corneal Structure

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The whole eyeballs were immersed in 4% paraformaldehyde for 24 h at room temperature. Subsequently, the eyeballs were treated with gradient alcohol and xylene and embedded in paraffin for sectioning at a thickness of 4 μm. Tissue sections stained with hematoxylin/eosin were used to observe the corneal structure. Immunohistochemical staining was performed according to our previously published protocol52 (link). Briefly, antigen retrieval was performed with sodium citrate repair solution by microwave heating, non-specific antigens were eliminated by 3% H2O2, and the sections were blocked with goat serum for 1 h and incubated with primary antibodies against IL-1β (1:100, ab254360, Abcam), TNF-α (1:1000, ab183218, Abcam), TRAF6 (1:300, ab33915, Abcam), IRAK1 (1:1000, ab238, Abcam), and COX2 (1:400, ab179800, Abcam) overnight at 4 °C. Next day, the sections were incubated with the Envision horseradish peroxidase system (Gene Tech, Shanghai, China) for 2 h at room temperature. The sections were finally incubated with 3,3′-diaminobenzidine (DAB) (Gene Tech, Shanghai, China) for 5 min. The staining was observed and captured with an Eclipse Ni microscope (Nikon, Tokyo, Japan).
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5

Comprehensive Western Blot Analysis of Neural Markers

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Western blotting was performed as previously described (Huang et al. 2018 (link)) with the diluted primary antibodies NeuN (1: 300, cat. # ab104224, Abcam), GFAP (1: 300, cat. # ab7260, Abcam), Iba-1 (1: 300, cat. # ab178846, Abcam), caspase-1 (1: 100, cat. # sc-56036, Santa Cruz), NLRP3 (1: 1,000, cat. # DF7438, Affinity), ASC (1: 1,000, cat. # ab47092, Abcam), Gasdermin D (GSDMD, 1: 500, cat. # sc-393581, Santa Cruz), IL-1β (1: 1,000, cat. # ab254360, Abcam), IL-18 (1: 1000, cat. # ab207323, Abcam), BDNF (1: 1000, cat. # ab108319, Abcam), PSD95 (1: 1000, cat. # ab238135, Abcam), Syna (1: 1000, cat. # ab32127, Abcam), and GAP43 (1: 1000, cat. # ab75810, Abcam) and incubated for 12 h at 4 °C. After being washed three times with 0.1 M PBS, the membranes were incubated with HRP-conjugated anti-rabbit or anti-mouse secondary antibodies (diluted to 1: 5000, Abcam, USA) for 2 h at RT. Finally, the protein bands were visualized using a Western blotting detection kit (Wanleibio, China).
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6

Western Blot Analysis of Protein Markers

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The target cell protein was obtained by RIPA method, and the protein concentration was determined by BCA kit (Solarbio, Beijing, China). Then, prepared protein was taken for gel electrophoresis separation, and the isolated protein was electrically transferred to PVDF membrane. After blocked with 5% skim milk, the PVDF membrane was subjected to primary antibodies: connective tissue growth factor (CTGF, #ab6992, 1:1000, Abcam, Cambridge, UK), collagen I (#ab270993, 1:1000, Abcam, Cambridge, UK), collagen III (#ab7778, 1:1000, Abcam, Cambridge, UK), Bcl-2 (#ab196495, 1:1000, Abcam, Cambridge, UK), Bax (#ab32503, 1:1000, Abcam, Cambridge, UK), NOD-like receptor protein 3 (NLRP3, #ab263899, 1:1000, Abcam, Cambridge, UK), ASC (rat: #ab180799, 1:1000, Abcam, Cambridge, UK; mouse: #67824S, Cell Signaling, Danvers, MA), caspase-1 (#83383, 1:1000, Cell Signaling, Danvers, MA), IL-β (#ab254360, 1:1000, Abcam, Cambridge, UK), IL-18 (#ab191860, 1:1000, Abcam, Cambridge, UK) and GAPDH (#ab9485, 1:1000, Abcam, Cambridge, UK). The next day, the PVDF membrane was incubated with secondary antibody (#ab288151, 1:5000, Abcam, Cambridge, UK) at room temperature. An enhanced chemiluminescence kit (ECL, #P0018S, Beyotime Biotechnology, Beijing, China) was added and exposed in the gel imaging system. The protein content was analysed using Quantity-One software (Bio-Rad, Hercules, CA).
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7

Protein Expression Analysis in Mouse Spinal Cord

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Radio-immunoprecipitation assay (RIPA) lysate (P0013B, Beyotime, China) was used to extract total protein from mouse spinal cord tissue. SDS-PAGE was used to isolate proteins. The target protein was transferred to nitrocellulose membrane and sealed with 5% skim milk powder for 90 min. Then, the membranes were incubated with primary antibodies NF-κB (10745-1-AP, 1:2,000, proteintech, USA), IL-1β (ab254360, 1:1,000, abcam, UK), TNF-α (17590-1-AP, 1:1,000, ProteinTech, USA), and β-actin (66009-1-Ig, 1:5,000, ProteinTech, USA) and secondary antibodies HRP anti-mouse (AWS0001a, 1:5,000, Abiowell, China) and HRP anti-rabbit (AWS0002a, 1:5,000, Abiowell, China) at room temperature for 90 min. Finally, the bands were visualized using SuperECL Plus (K-12045-D50, Advansta, USA) and photographed using Chemiscope6100 (CLiNX, China). β-actin was used as an internal reference.
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8

Paroxetine Modulates RANKL-Induced Osteoclastogenesis

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Paroxetine was purchased from Apexbio (Suzhou, China). Alpha-MEM and DMEM were procured from Biosharp (Anhui, China). The IL-1β and Cell Counting Kit-8 (CCK-8) were purchased from Med Chem Express (New Jersey, USA). RANKL and M-CSF were procured from LifeTein (Beijing, China). Primary antibodies against Nlrp3 (ab263899, 1:1000), IL-1β (ab254360, 1:1000), Caspase1 (ab179515, 1:1000) and ADAMTS5 (ab185722, 1:1000) were purchased from Abcam (Cambridge, UK). The aggrecan antibody (PA1-1746, 1:1000) was procured from Thermo Fisher Scientific (Waltham, MA, USA), and MMP3 (ET1705-98, 1:1000) and SOX9 (ET1611-56, 1:1000) antibodies were purchased from Huaan Biotechnology (Hangzhou, China). Primary antibodies against P65 (8242, 1:1000), p-P65 (3033, 1:1000), IκBα (4812, 1:1000), p-IκBα (2859, 1:1000), and β-actin (4970, 1:10,000) were procured from Cell Signaling Technology (Danvers, MA, USA). The NFATc1 antibody (YT5381, 1:1000) was procured from ImmunoWay (Shanghai, China).
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9

Protein Extraction and Analysis from Cardiac Tissues

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Total proteins were extracted from cardiac tissues and H9c2 cells by radioimmunoprecipitation assay lysis buffer (Beyotime) and measured through a bicinchoninic acid protein assay kit (Beyotime). Protein samples (20 μg) were isolated by 10% SDS-PAGE (Beyotime) and transferred into polyvinylidene fluoride (PVDF; Beyotime) membranes. PVDF membranes were then treated with 5% skimmed milk/TBST for 1 h. Subsequently, the membranes were treated with primary antibodies overnight at 4 °C and secondary antibody for another 2 h at ambient temperature. The primary antibodies were as follows: anti-interleukin (IL)-1β (ab254360; 1:1000, Abcam), anti-nucleotide-binding oligomerization domain (NLRP3; ab263899; 1:1000, Abcam), anti-GSDMD-N (DF13758; 1:1000, Affinity), anti-caspase-1 (ab286125; 1 μg/mL, Abcam), anti-ASC (ab180799; 1:1000, Abcam), anti-transforming growth factor (TGF-β1; ab215715; 1:1000, Abcam), and anti-GAPDH (ab181602; 1:1000, Abcam). GAPDH was used as an internal reference. Finally, protein bands were visualized with an electrochemical luminescence on a Tanon 5200 machine (Tanon, Shanghai, China). Protein band intensities were detected with the Image J software (NIH, MD, USA).
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10

Immunohistochemical Profiling of Brain Tissue

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For immunohistochemical (IHC) staining, brain tissues were fixed and paraffin-embedded with 5 μm sections. After deparaffinization, rehydration, antigen retrieval, quenching of endogenous peroxidase and blocking, sections were incubated with primary antibodies overnight at 4°C. The sections were then incubated with the secondary antibody conjugated by horseradish peroxidase (HRP) for 60 min and developed with a DAB chromogenic solution. For HE, the whole brain tissues of the mice were harvested at 3 weeks, fixed by 4% PFA, embedded in paraffin, and cut into 15-μm coronal sections. The slide with the largest tumor area was stained with hematoxylin and eosin and visualized using a light microscope.
The primary antibodies were used: anti-FTL (1:100, ab109373, Abcam), anti-SOX2 (1:200, MA1-014, Thermo Fisher), anti-IBA1 (1:200, 10904-1-AP, Proteintech), anti-CD11B (1:200, ab133357, Abcam), anti-ki67 (1:200, ab15580, Abcam), anti-iPLA2β (1:200, ab244247, Abcam), anti-IL-1β (1:200, ab254360, Abcam), and anti-CD163 (1:200, ab182422, Abcam).
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