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22 protocols using ac devd pna

1

Quantifying Apoptotic Caspase-3 Activity

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Caspase-3 activity is one of the main indicators of apoptotic cell death. For the analysis of caspase-3 activity, cells were first lysed with lysis buffer containing DTT (DL-dithiothreitol, Sigma-Aldrich, St. Louis, MO, USA) and then incubated at 37 °C with the colorimetric substrate Ac-DEVD-pNA (Sigma-Aldrich, St. Louis, MO, USA) as previously described (Rzemieniec et al. 2016 (link); Kajta et al. 2019 (link)). The substrate was cleaved by caspase-3 to p-nitroaniline, and the levels were measured after 60 min using an Infinite M200PRO microplate reader (Tecan, Switzerland) and Tecan i-control software. The blank sample was subtracted from each value, and the obtained data were standardized to the absorbance of the control (DMSO-treated) cells. The results are presented as a percentage of the control ± SEM.
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2

Caspase-3 Activity Assay in Cancer Cells

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The caspase-3 activity was measured using caspase-3 colorimetric assay. MDA-MB-231 and Hep-G2 cells were seeded in 6-well plate at the density of 3 × 105 cells/well and treated with IC50 concentrations of most potent extracts and etoposide for 24 h. After incubation the cells were harvested and washed with PBS. Then cell pellets were re-suspended in ice-cold cell lysis buffer (20 mM PIPES, 10 mM KCl, 2 mM MgCl2, 4 mM DTT, 2 mM EDTA and 1 mM EGTA freshly supplemented with protease inhibitors) for 10 min. At the end of the incubation, cell lysates were centrifuged for 15 min (10,000×g) and then the cytosol fraction was transferred to fresh tubes and put on ice for performing the assays. One hundred micrograms protein was used for each assay in the presence of 200 μM colorimetric caspase substrate (Ac-DEVD-pNA, Sigma) in 100 μL reaction buffer (100 mM NaCl, 50 mM HEPES, 10 mM DTT, 0.1% CHAPS, 0.1 mM EDTA, 10% Glycerol). Protein concentrations were measured by the Bradford method and bovine serum albumin was used as the standard. The OD was determined at 405 nm (every 60 s for 120 min) by an ELISA reader. Caspase-3 activity was expressed as the change of the activity in treated cancer cells compared to the untreated controls.
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3

Caspase Activity Measurement Protocol

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Caspase-1 and caspase-3 activity was measured based on the cleavage of a caspase-1 substrate (Ac-YEVD-pNa, Sigma) or caspase-3 substrate (Ac-DEVD-pNa, Sigma), respectively (Caspase 3 Activity Assay Kit, Colorimetric; Sigma). In a clear flat-bottom 96-well plate, cleavage buffer (50 mM HEPES, pH 7.4, 100 mM NaCl, 0.1% CHAPS, 10 mM DTT, 1 mM EDTA, 10% glycerol), LANA peptides (tested as competitive inhibitors of caspases) and the colorimetric caspase substrate were added to the plate in that order. The reaction was started with the addition of caspase-3 (Sigma; 0.25 μg ml-1) or caspase-1 (Calbiochem; 0.5 units μl-1) and activity was monitored and the rate of reaction over the 30-minute incubation period determined.
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4

Caspase-3 Activity Assay in Cell Lysates

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The nitrogen-frozen hepatic or hepG2 cell lysates were incubated with the caspase-3 substrate, acetyl-DEVD-p-nitroanilide (Ac-DEVDpNA; Sigma) at 37℃ for 1 h, in buffer containing 30mM HEPES, 0.3 mM EDTA, 100 mM NaCl, 0.15% Triton X-100, and 10 mM DTT. The changes in optical density at 405 nm were then measured, using a spectrophotometer.
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5

Colorimetric Assay for Caspase-3 Activity in Cell Lysates

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The activity of caspase-3 enzymes was measured in cell lysates by a colorimetric assay kit (CASP-3-C, SIGMA-ALDRICH, Saint Louis, MO, USA), that is based on the hydrolysis of the compound acetyl-Asp-Glu-Val-Asp p-nitroanilide (Ac-DEVD-pNA) (A 2559, Sigma-Aldrich, Saint Louis, MO, USA) by caspase-3. The reaction releases the p-nitroaniline moiety (p-NA) that absorbs at 405 nm. Cells were pre-incubated with 5 μΜ doxorubicin hydrochloride (DOX) (Sigma–Aldrich, Deisenhofen, Germany) for 3 h for caspase cascade initiation [41 (link),42 (link)]. Samples (10 μL) were tested both with and without the caspase-3 inhibitor acetyl-Asp-Glu-Val-Asp-al (Ac-DEVD-CHO, 20 μΜ final concentration), in a total reaction volume of 100 μL in 96-well plates. The substrate Ac-DEVD-pNA concentration was 200 μM and the assay was performed at 37 °C for 90 min. The caspase-3 specific activity was expressed as the percentage of μmol of p-nitroaniline released per min per μg of total protein values compared to control.
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6

Caspase-3 Activity Quantification

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The caspase-3-like activity was determined after the cleavage of the labeled substrate by the detection of the chromophore p-nitroaniline (pNA), measured spectrophotometrically at 405 nm. Total protein extract (25 µg) was incubated with a reaction buffer [25 mM 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid, 0.1% 3-[(3-cholamidopropyl) dimethylammonio]-1-propanesulfonate, 10% sucrose and supplemented with 10 mM dithiothreitol (pH 7.5)] and 2 mM of caspase-3 substrate (N-Acetyl-Asp-Glu-Val-Asp pNA and Ac-DEVD-pNA, Sigma-Aldrich) for 2 h at 37°C. The amount of generated pNA was calculated by extrapolation with a standard curve of free pNA.
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7

Apoptosis Assay with TrxR1 Knockdown

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MTT (3-(4, 5-dimethyl-2-thiazolyl)-2,5-diphenyl-2H-tetrazolium bromide), streptomycin, and penicillin were obtained from Amresco (Solon, OH). BSA, PMSF, and Na3VO4 were provided by Beyotime (Nantong, China). NADPH was obtained from Roche (Mannheim, Germany). The Annexin V-FITC and PI apoptosis assay kit was purchased from Zoman Biotech (Beijing, China). DMEM, puromycin, DMSO, G418, DCFH-DA, DHE, DTT, Hoechst 33342, Ac-DEVD-pNA, insulin, and CHAPS were products of Sigma-Aldrich (St. Louis, United States). FBS was a product of Sijiqing (Hangzhou, China). DTNB was a product of J&K Scientific (Beijing, China). All other reagents used were of analytical purity. The recombinant rat TrxR1 (WT TrxR1) was provided by Professor Jianqiang Xu (Dalian University of Technology, China). The Escherichia coli (E. coli) Trx was produced as described by our previous reference (Liu et al., 2014 (link)). The plasmids, shTrxR1 and shNT, and the cell lines, HEK-TrxR1 cells and HEK-IRES cells were provided by Prof. Constantinos Koumenis of the University of Pennsylvania, United States (Nalvarte et al., 2004 (link); Javvadi et al., 2010 (link)). The establishment of HeLa-shTrxR1 cells and HeLa-shNT cell lines refer to our previously published literature (Duan et al., 2014 (link)).
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8

Caspase 3 Activity Determination

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For determination of caspase 3 activity, tissue lysates were mixed with 50 mM HEPES buffer (pH 7.4) containing 0.1% NP-40, 1 mM dithiothreitol, 0.1 mM ethylenediaminetetraacetic acid, and 150 mM NaCl, and incubated on ice for 5 min. After centrifugation at 1000×g for 10 min at 4 °C, samples containing 150–200 μg of protein were incubated with 10% (v/v) glycerol and 0.2 mM Ac-DEVD-pNA (#A2559, Sigma-Aldrich) overnight at 37 °C. The formation of p-nitroanilide was recorded at 405 nm as a measure of caspase 3 activity [30 (link)].
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9

Caspase-3 Activity Assay for Apoptosis

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Caspase-3 activity was used as a marker for cell apoptosis and was determined according to Nicholson et al. [30 (link)]. The enzyme activity was measured with the Ac-DEVD-pNA colorimetric assay as previously described [31 (link)]. Briefly, cultured cells were lysed on ice with a lysis buffer (50 nM HEPES, pH 7.4, 100 nM NaCl, 0.1 % CHAPS, 1 nM EDTA, 10 % glycerol, and 10 nM DTT). The reaction was initiated by the addition of caspase-3 substrate Ac-DEVD-pNA (N-acetyl-Asp-Glu-Val-Asp-p-nitroanilide; Sigma) to a final concentration of 200 µM. The samples were incubated in the dark at 37 °C for 1 h. Then, the colorimetric release of p-nitroaniline from the Ac-DEVD-pNA substrate was recorded every 30 min and monitored continuously for 120 min at 405 nm in a microplate reader (Bio-Tek ELx800). Cells that were treated with 1 nM staurosporine were used as a positive control (Sigma, St Louis, MO, USA). The data were analyzed with KCJunior (Bio-Tek Instruments), normalized to the absorbance in vehicle-treated cells, and expressed as the percent of control ± SEM of ten separate samples that were run in triplicate. The absorbance of the blanks, acting as no-enzyme controls, was subtracted from each value. Because the initial substrate concentration was subsaturating (200 µM), only the data within the linear range of the reaction curve provided a consistent measure of caspase-3 activity.
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10

Caspase-3 Activity Assay in A549 Cells

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Caspase-3 activity was assayed using a caspase-3 colorimetric activity assay kit (BIOMOL International, PL, USA). This study is based on a spectrophotometric assay of p-nitroaniline (p-NA) once the cleavage of caspase-3 substrate, Ac-DEVD-pNA (Sigma, St. Louis, MO, USA). About 3 × 106 A549 cells were exposed to OEO (½ IC50 and IC50) and Etoposide (IC50) for 4 h. After harvesting the cells and washing with cold PBS, the cells were lysed by cell lysis buffer [PIPES (20 mM), Mgcl (2 mM), KCl (10 mM), DTT (4 mM), EGTA (1 mM), EDTA (2 mM), containing PMSF (1 mM), pepstatin (1 mM), leupeptin (2.2 μM), and benzamide chloride (0.5 mM)] on ice. The cell lysates were centrifuged (12,000g, 4 °C), and then the supernatants were used to estimate the protein concentration using the Bradford method. In the following, equal amounts of each protein (100 μg), the colorimetric caspase-3 substrate (AcDEVD-pNA, 5 μL of 2 mmol/l) and assay buffer [Nacl (100 mM), HEPES (50 mM), DTT (10 mM), CHAPS (0.1%), EDTA (0.1 mM), Glycerol (10%)] were mixed, and the reaction mixtures were incubated (at 37 °C in darkness for 3 h) and the absorbance was measured at 405 nm using a microplate reader68 (link).
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