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56 protocols using a001 3 2

1

Evaluating Oxidative Stress Markers in Lung Tissues

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The lung tissues were homogenized with the tissue lysis buffer (Beyotime). The tissue homogenate was lysed on ice for 15 min and treated with centrifugation (4000 g, 4 °C, 15 min). According to the protocol, MPO activity in the supernatant was determined using a MPO assay kit (A044-1-1, Nanjing Jiancheng Biological Engineering Research Institute Co., Ltd, Nanjing, China). Then, cells were lysed primarily. Cell lysate was centrifuged at 600 g and 4 °C for 10 min to collect the supernatant. According to the protocols, MDA content and SOD activity were measured using a MDA commercially available kit (A003-1-2, Nanjing Jiancheng Biological Engineering Research Institute Co., Ltd) and a SOD assay kit (A001-3-2, Nanjing Jiancheng Biological Engineering Research Institute Co., Ltd).
Following the manufacturer's instructions, ROS level was determined using a ROS assay kit (S0033S, Beyotime). For in vivo analysis, lung homogenate was incubated with 2′,7′-dichlorodihydrofluorescein diacetate (DCFH-DA) at 37 °C for 30 min. The change in fluorescence intensity at 500/530 nm was analyzed using a fluorescence microplate (Bio-Rad). For in vitro analysis, cells were incubated with DCFH-DA at 37 °C for 20 min and washed with serum-free medium. The fluorescence intensity at 488/525 nm was determined and results were shown as percentages.
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2

Antioxidant Capacity Evaluation of CeONPs

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The antioxidant capacity of the CeONPs was assessed using multiple assays according to the manufacturer’s protocol. The free radical scavenging effects of CeONPs were tested using a hydroxyl free radical assay kit (A018-1-1, Nanjingjiancheng, Nanjing, China) and a 2,2-diphenyl-1-picrylhydrazyl (DPPH) free radical scavenging capacity assay kit (A153-1-1, Nanjingjiancheng). Superoxide dismutase (SOD) assay kits (A001-3-2, Nanjingjiancheng) and catalase (CAT) assay kits (A007-1-1, Nanjingjiancheng) were used to evaluate the SOD and CAT enzyme activities of CeONPs, respectively.
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Cardiac Biomarker Quantification

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The LDH and SOD levels of heart effluent were determined using assay kits (A020-2-2, A001-3-2, Nanjing Jian Cheng Bioengineering Institute, Nanjing, China). CK-MB was evaluated using an ELISA kit (SEKR-0059, Solarbio life sciences, Beijing, China). After reperfusion as described above, the effluent was plated in a 96-well plate, and the absorbance at 450 nm was determined on a Microplate Reader (Thermo Fisher Scientific, United States).
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4

Anti-oxidative and Anti-inflammatory Assays

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Assay kits for SOD, MDA, CAT, GPx, and MPO were obtained from Jiancheng Bioengineering Institute (A001-3-2, A003-1-2, A007-1-1, H545-1-1, and A044-1-1) (Nanjing, China). ELISA assays for PGI, PGII, iNOS, NO, PGE2, TNF-α, IL-1β, and IL-6 were obtained from MEIMIAN (MM-70280R1, MM-70274R1, MM-0889R1, MM-70810R2, MM-0068R1, MM-0180R1, MM-0047R2, and MM-0190R1). Rabbit anti-NF-κBp65 conjugated antibody (AF5006), rabbit anti-p-NF-κBp65 conjugated antibody (AF2006), and mouse anti-β-actin antibody (T0022) were obtained from Affinity. Lipopolysaccharides (LPS) (batch number HY-D1056) were obtained from MedChemExpress.
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5

Lipid Peroxidation and SOD Assay

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Diluted cell samples (100 µl) were transferred to a 96-well plate and incubated at room temperature for 2.5 h. After being rinsed 4 times with 1X washing buffer, each well of the plate was added together with 100 µl of prepared biotin conjugate, followed by 1 h of incubation at room temperature with gentle shaking. After rinsing 4 times with 1X washing buffer, the plate was supplemented with 100 µl of the prepared streptavidin-HRP solution, and incubated at room temperature for 45 min with gentle shaking. Following that, the solution was discarded, the plate was rinsed with 1X washing buffer for another 4 times, and each well was added with 100 µl of TMB substrate. Subsequently, the plate was incubated at room temperature for 30 min in the dark with gentle shaking. Afterwards, 50 µl of stop solution was placed into each well, and the side of the plate was tapped to mix the solution well. Finally, 200 µl of supernatant was collected and then added to the 96-well plate, subsequent to which the absorbance was measured at 532 nm using a microplate reader (Z742711-1EA; Sigma-Adrich; Merck KGaA). Lipid peroxidation assay kit (MDA; A0031-2) and superoxide dismutase assay kit (SOD; A001-3-2) applied in the whole processes were purchased from Nanjing Jiancheng Bioengineering Institute.
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Antioxidant Enzyme Activity Assay

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The activities of total antioxidant enzyme SOD and glutathione peroxidase (GSH-Px) were measured by using and following the recommended instructions of the colorimetric commercial kits (Cat. No. A001-3-2 and A005-1-2, respectively, Nanjing Jiancheng Bioengineering Research Institute). The activity of SOD was assayed with the reaction based on its inhibition on the scale of superoxide anion generated by xanthine and xanthine oxidase reaction system. A SOD unit was measured as the amount of enzyme that led to a half inhibition of the nitroblue tetrazolium reduction rate using the plate reader at 550 nm. GSH-Px was measured according to the manufacturer’s protocol. Based on the reaction ability of dithodinitrobenzoic acid with sulfhydryl compounds at 405 nm absorption peak in producing a relatively stable yellow color, GSH activity was measured. GSH-Px is preferably represented by catalyzed GSH reaction rate by measuring absorbance at 412 nm for 5 min. In this study, the activities of SOD and GSH-Px were expressed as units per milligram of protein (U mg–1). The concentration of protein was determined using a protein quantification kit (C503061-1250, Sangon Biotech, China).
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7

Measuring Oxidative Stress Biomarkers

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The levels of serum creatinine (Scr) and blood urea nitrogen (BUN) were measured with assay kits (Jiancheng bioengineering institute, Nanjing, China). The assay for malondialdehyde (MDA) content was performed according to the protocols of the MDA kit (A003-1-2, Jiancheng bioengineering institute, Nanjing, China). And the enzyme activity of superoxidase dismutase (SOD), catalase (CAT) and glutathione peroxidase (GSH-Px) were examined by the test kits (A001-3-2, A007-2-1, A005-1-2, Jiancheng bioengineering institute, Nanjing, China). The detailed experimental protocols were provided in supplementary materials.
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8

Salt Stress Impacts Antioxidant Enzymes

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The seeds from WT, VC and PePLDδ-overexpressed lines (OE6 and OE7) were germinated and cultured on 1/2 MS medium for seven days. These seedlings were then treated with 0 or 130 mM NaCl for another seven days. Control and salt-stressed seedlings were harvested and ground in liquid-nitrogen-precooled mortars. The samples (0.1 g fresh weight) were mixed with 1 mL precooled extraction buffer containing 1mM EDTA, 1% PVP, 1mM ASA and 50 mM potassium phosphate buffer (pH 7.0). Through centrifugation (12,000 g) at 4 °C for 10 min, the supernatant solution was obtained to determine enzyme activities of superoxide dismutase (SOD), peroxidase (POD) and ascorbic acid peroxidase (APX). Antioxidant enzyme activity assay kits, such as A001-3-2 (total SOD determination kit), A084-3-1 (POD assay kit) and A123-1-1 (APX test box) (Nanjing Jiancheng Bioengineering Institute, Nanjing, China), were used to detect enzymatic activity according to the manufacturer instructions. The total protein in crude enzyme extract was assayed with A045-2-2 (total protein determination kit) (Nanjing Jiancheng Bioengineering Institute, Nanjing, China).
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9

Serum Hormone and Ovarian Oxidative Stress Levels

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Blood samples were collected by retro-orbital bleeding while mice were during the dioestrus, and then, samples were allowed to clot at room temperature for 60 min. At last, the samples were centrifuged at 2,500 rpm for 15 min to harvest serum, which were stored at −80°C. The commercially available ELISA kits FSH (ml001876) and E2 (ml063198) were purchased from Shanghai Enzyme-linked Biotechnology Co., Ltd. and were used to measure the serum follicle-stimulating hormone (FSH) and estradiol (E2) levels of samples. The levels of oxidative stress in ovaries, including the total superoxide dismutase (SOD) activity and L-Glutathione (GSH) level, were measured by using commercially available kits for SOD (A001-3-2) and GSH (A005-1-2) (Jiancheng Bioengineering Institute, Nanjing, China). All steps were performed according to the manufacturer’s instructions.
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10

Plasma Biomarkers and Liver Analysis

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Plasma was collected by centrifuging the blood samples at 2,000 g for 30 min at 4° C. Plasma alanine aminotransferase (ALT) was tested using analytical reagent kits (C009-2-1, Nanjing Jiancheng Bioengineering Institute, China). Plasma LPS level was determined using enzyme-linked immunosorbent assay kits (50-658U, Lonza, Walkersville, MD). Liver tissues were homogenized and centrifuged according to the manufacturer's protocols. Then the levels of malondialdehyde (MDA), superoxide dismutase (SOD), and GSH-Px in the liver were determined using commercial kits, according to the manufacturer’s instructions (A003-1-2, A001-3-2, A005-1-2, Nanjing Jiancheng Bioengineering Institute, China).
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