The largest database of trusted experimental protocols

30 protocols using anti tnf α

1

Protein Extraction and Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Brain regions (OE, OB, cerebral cortex, cerebellum) were homogenized by a motor-driven pestle on ice in 1× RIPA buffer (Millipore) supplemented with 1 mM phenylmethane sulfonyl fluoride (PMSF), 1 mM Na3VO2, 10 mM NaF, phosphatase inhibitor cocktails (Sigma), and Roche Complete Mini EDTA-free Protease Inhibitor Cocktail Tablet (Roche). Homogenates were centrifuged at 10,000 × g for 10 min at 4°C; the supernatants were analyzed by performing Western blotting using 20 μg of total protein on Novex NuPAGE 4–12% Bis-Tris protein gels (Thermo Scientific). Membranes were washed with PBS with 0.05% Tween-20 (PBST), then blocked with 5% milk/PBST or 5% BSA/PBST for 1 hr at 21–23°C, followed by overnight incubation with primary antibodies at 4°C: anti-TNFα (1:250, mouse; R&D Systems), anti-3-nitrotyrosine (1:1,000, rabbit; Millipore), anti-4-hydroxynonenal (1:250, mouse; R&D Systems), anti-olfactory marker protein (OMP) (1:400, goat; Santa Cruz), anti-cleaved caspase 3 (1:1,000, rabbit; Cell Signaling), anti-caspase 3 (1:1,000, rabbit; Cell Signaling), anti-actin (1:10,000, mouse; Sigma). Horseradish peroxidase (HRP; 1:10,000, goat; Jackson)-enhanced chemiluminescence was detected using West Pico Chemiluminescent Substrate (Thermo Scientific). The density of the bands was assessed using ImageJ (Abràmoff et al. 2004 ).
+ Open protocol
+ Expand
2

Cytokine Inhibition in Inflammation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Anti-IL-1β, anti-IL-6, anti-TNFα and anti-CINC-1 antibodies were supplied by R&D Systems Inc. (USA). Indomethacin, AACOCF3 and PACOCF3 were purchased from Biomol Research Laboratories (USA). GM6001 was supplied by USBiological (USA); whereas L-NMMA, HOE 140, Lys-(Des-Arg9,Leu8)-bradykinin, promethazine, methysergide, BQ-123, BQ-788 and fucoidan were purchased from Sigma-Aldrich Co. (USA). Celecoxib was supplied by Searle and Co (Puerto Rico). Zileuton was purchased from Abbott Laboratories (Zyflo®, USA). Carrageenin was purchased from Marine Colloids.
+ Open protocol
+ Expand
3

Eosinophil/Basophil Progenitor Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Enriched CD34+ progenitors (8000 cells/well) were cultured in duplicates in 0.9% methylcellulose (Sigma Aldrich, St. Louis, MO, USA) with Iscove's 2+ (modified Dulbecco's medium (Gibco, Burlington, Ontario, Canada) supplemented with FBS, penicillin–streptomycin, and 2-ME) and IL-3 (1 ng/mL), IL-5 (1 ng/mL), or GM-CSF (10 ng/mL; BD Biosciences, Mississauga, ON, Canada) in the presence or absence of TSLP (10 ng/mL; PeproTech, Rocky Hill, NJ, USA) in 12-well plates (Corning Costar, Corning, NY, USA). In some experiments, cells were treated with anti-TSLP (Amgen, Seattle, WA, USA), anti-TSLPR (R&D Systems, Minneapolis, MN, USA), anti-TNFα (R&D), or isotype control (each at 10 µg/mL). Treatment with the indicated stimulatory/inhibitory conditions had no effects on cell viability as determined by trypan blue exclusion. Cultures were incubated for 14 days (37°C, 5% CO2). Eo/B CFU were enumerated using inverted light microscopy (colonies were defined as tight, granular clusters ≥40 cells).
+ Open protocol
+ Expand
4

Immunohistochemical Analysis of Inflammatory Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fixed joint tissues embedded in paraffin were cut into 7-µm-thick sections, dewaxed using xylene, dehydrated through an alcohol series, and stained with hematoxylin and eosin, safranin O, or toluidine blue to detect proteoglycans. Endogenous peroxidase activity was quenched with methanol/3% H2O2. Immunohistochemistry was performed using a Vectastain ABC kit (Vector Laboratories, Burlingame, CA, USA). Sections were incubated with specific antibodies (i.e., anti-TNFα, anti-IL-1β, anti-IL-6, anti-IL-17, anti-RANKL, anti-VEGF, and anti-HIF-1α; all from R&D Systems) overnight at 4 °C. The tissue sections were then incubated with a biotinylated secondary antibody, followed by a streptavidin-peroxidase complex for 1 h. The final color product was developed using diaminobenzidine as the chromogen (DAKO, Carpinteria, CA, USA).
+ Open protocol
+ Expand
5

Antibody-Coated Nanovial Preparation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Streptavidin-coated nanovials were reconstituted at a five time dilution in Washing Buffer containing 140 nM (20 μg/mL) of each biotinylated antibody or cocktail of antibodies: anti-CD45 (Biolegend, 368534) and anti-IFN-γ (R&D Systems, BAF285), anti-TNF-α (R&D Systems, BAF210), anti-IL-2 (BD Sciences, 555040). Nanovials were incubated with antibodies for 30 minutes at room temperature on a rotator and washed three times as described above. Nanovials were resuspended at a five times dilution in Washing Buffer or culture medium prior to each experiment.
+ Open protocol
+ Expand
6

Neutrophil Necroptosis Signaling Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
S. aureus supernatant was obtained by centrifugation and filtration. HKLAC was obtained by incubating LAC cells in PBS (1 × 109 CFU/mL) at 65 °C for 2 h to inactivate the bacteria. Neutrophil lysates were run on bolt 4–12% Bis-Tris Plus gels (Life Technologies) and transferred to polyvinylidene difluoride membranes (Millipore). Then the membrane was blocked with 5% milk in TBST (Tris-buffered saline plus Tween) for 1.5 h at room temperature. Immunodetection was performed using anti-phospho-MLKL (Ser358) (Abcam, Cambridge, UK), anti-MLKL (Abcam, Cambridge, UK), anti-TNFα (R&D Systems, USA), and β-actin (Sigma Aldrich Chemical Co, USA) antibodies followed by secondary antibodies conjugated to horseradish peroxidase (Santa Cruz Biotechnology Inc, USA).
+ Open protocol
+ Expand
7

Protein Expression Analysis by Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein extracts were separated using sodium dodecyl sulfate-polyacrylamide gel electrophoresis and then transferred to polyvinylidene fluoride membranes (Millipore, Germany). Protein expression was detected by western blot analysis. Antibodies used herein including anti-IL-6, anti-TNF-α, anti-p-AKT, anti-AKT, anti-SRC, anti-p-SRC, anti-VEGFA, anti-MAPK1, anti-IL-1β, anti-EGFR and β-actin were obtained from R&D Systems. Band density was quantified using ImageJ software and normalised to the corresponding control group.
+ Open protocol
+ Expand
8

Cytokine Signaling Pathway Modulation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Ham’s F12 medium was obtained from GE Healthcare Europe (Freiburg, Germany). RPMI-1640, GlutaMax and FCS were purchased from Life Technologies (Darmstadt, Germany). PBS was acquired from Biochrom (Berlin, Germany). Pargyline (Parg), phorbol 12-myristate 13-acetate (PMA) and trichostatin A (TSA) were supplied by Sigma-Aldrich Chemie (Munich, Germany). IL-1β, IL-1ra, TNF-α and anti-TNF-α were obtained from R&D Systems (Wiesbaden, Germany). Flagellin from Salmonella typhimurium was purchased from InvivoGen (San Diego, USA) and actinomycin D was supplied from Biovision (Milpitas, USA). All other applied chemicals were of analytical grade and acquired from commercial sources.
+ Open protocol
+ Expand
9

Immunohistochemical Analysis of TNFα and MMP9

Check if the same lab product or an alternative is used in the 5 most similar protocols
Paraffin-embedded sections, 3-4 μm thick, were used for routine H&E staining and for immunoperoxidase immunohistochemical examination with the DAKO EnVision detection system. The following primary monoclonal antibodies were used: anti-TNFα (R&D, UK) and matrix metalloproteinase 9 (MMP9) (Novocastra).
For immunohistochemistry, the paraffin-embedded sections were placed on adhesive plates and dried at 56°C for 24 hours and were later deparaffinated in a series of xylenes and alcohols with decreasing concentrations. The activity of endogenous peroxidase was inhibited with 3% hydrogen peroxide solution in methanol for 5 minutes.
In order to retrieve the antigenicity of tissues and allow them to react with antibodies, specific procedures were used for each tested antibody, according to the manufacturer's instructions. After incubation with diluted antibodies for 60 minutes at room temperature, they were washed with Tris buffer twice. DAKO EnVision double-step visualization system was then applied in order to visualize the antigen-antibody reaction. In the case of a positive immunohistochemical reaction, cellular nuclei were stained with Meyer haematoxylin for 2 minutes. After dehydration and processing through a series of acetones and xylenes, the sections were fixed in Canadian balm.
+ Open protocol
+ Expand
10

SDS-PAGE Analysis of Cell Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
BMSC or OCL precursor cell lysates were loaded onto 7.5% sodium dodecyl sulfate polyacrylamide gels (SDS-PAGE) (for V-CAM1 expression) or 10% SDS-PAGE (for cell signaling analyses) and electrophoresed under reducing conditions using precast gels (Bio-Rad Laboratories, Hercules, CA), as described (16 (link)). Antibodies used for immunoblotting included: anti-phospho PKCζ (Thr410/403), anti-phospho IκBα (Ser32), anti-phospho p38 MAPK (Thr180/Tyr182) and anti-p38 MAPK, anti-PKCξ, anti-IκBα, cleaved and uncleaved caspases 3, 7, and 9 (all from Cell Signaling, Boston, MA, catalog numbers 9378, 2859, 9211, 9212, 9368, 9242, respectively), anti-c-Fos, anti-NFATc1 and anti-V-CAM1 (Santa Cruz Biotechnology, Dallas, TX, catalog numbers sc-52, sc-7294, sc-1504, respectively), and anti-TNF-α (R&D Systems, Minneapolis, MN, catalog number AF-410-NA). β-actin was used for a control (Abcam, Cambridge, MA, catalog ab49900).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!