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49 protocols using anti rabbit 7074

1

Pharmacological inhibition of EGFR signaling

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Small molecule inhibitor afatinib was purchased from LC Labs (A-8644) (LC Laboratories, Woburn, MA, USA). Recombinant human EGF was purchased from R&D systems (236-EG) (R&D Systems Inc., Minneapolis, MN, USA) and was prepared according to the manufacturer's recommendation. Doxorubicin (doxorubicin, D1515) and anti-β-Actin (A2228) antibodies were purchased from Sigma (Sigma-Aldrich Corp, St. Louis, MO, USA). Anti-phospho-EGFR (Y1068) (3777S), anti-EGFR (2232S), anti-phosphor-AKT (S473) (4060S), anti-AKT (9272S), anti-phospho-S6 (S235/236) (4858S), anti-S6 (2217S), anti-PARP (9532S), and anti-Caspase 3 (9662) primary antibodies, together with anti-Mouse (7076S) and anti-Rabbit (7074S) secondary antibodies were from Cell Signaling Technology (Cell Signaling Technology, Danvers, MA, USA).
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2

Acetylcholinesterase Inhibition and Neuroprotection

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Acetylthiocholine iodide, bovine serum albumin (BSA), ethylene glycol tetraacetic acid (EGTA), dimethyl sulfoxide (DMSO), thiobarbituric acid (TBA), Triton X-100, Tween 20, L-Glutathione, tetrachloro-1,1,3,3-tetraethylbenzimidazolylcarbocyanine iodide (JC-1), 5,5′-dithiobis(2-nitrobenzoic acid) (DTNB), 2′,7′-dichlorofluorescein diacetate (DCF-DA), metaphosphoric acid, and all other chemicals were obtained from Sigma-Aldrich Chemical Co. (St. Louis. MO, USA). A superoxide dismutase (SOD) assay kit was purchased from Dojindo Molecular Technologies (Kumamoto, Japan) and an adenosine triphosphate (ATP) assay kit was purchased from Promega Corporation (Madison, WI, USA). The primary antibodies [β-actin (sc-69879), phosphorylated-insulin receptor substrate (p-IRS)(ser307), phosphorylated-tau (p-tau)(ser404) (sc-12952), Acetylcholinesterase (AChE) (sc-373901), phosphorylated-protein kinase B (p-Akt) (sc-514032), amyloid-β (Aβ) (sc-28365), and insulin degradation enzyme (IDE) (sc-393887)] were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Other primary antibodies (Tumor necrosis factor alpha (TNF-α) (#3707), and phosphorylated-AMP activated kinase (p-AMPK) (#2535)) and secondary antibodies (anti-mouse (7076S) and anti-rabbit (7074S)) were purchased from Cell Signaling Technology (Danvers, MA, USA).
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3

Protein Expression Analysis in Transfected Cells

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M-PER mammalian protein extraction reagent (Thermo Fisher), containing a protease inhibitor cocktail, was used to extract protein lysate from transfected cells (Thermo Fisher). SDS-PAGE was used to separate 40 μg of protein lysate, followed by blotting onto a nitrocellulose membrane (Bio-Rad, USA). The membrane was blocked using 5% skimmed milk in Tris-buffered saline containing 0.1% Tween 20 (TBST) for 1 h. Subsequently, blot was incubated overnight at 4 °C with primary antibodies against GLUT2 (Anti-rabbit; 1:1000, #ab54460, Abcam, UK), INSRβ (Antimouse; 1:1000; #ab69508, Abcam, UK), INSRα (Anti-rabbit; 1:1000; #ab5500, Abcam, UK), Insulin (Anti-mouse; 1:1000; #8138s, Cell signaling Technology, USA), GCK (Anti-rabbit; 1:500; #ab37796, Abcam, UK) PDX1 (Anti-rabbit; 1:3000, #ab47267, Abcam, UK), or β-actin (1:5000; #A5441, Sigma-Aldrich, Germany). The membrane was incubated with secondary antibodies (anti-mouse #7076S and antirabbit #7074S, Cell signaling Technology, USA) at 1:1000 dilutions at room temperature for 1 h. ECL substrate kit (Bio-Rad, USA) was used to detect chemiluminescence. Bio-Rad Image Lab software (Bio-Rad, USA) was used to detect protein bands. Quantification of the bands was done using Image J software. In all experiments, β-actin was used as an endogenous control (see Supplementary Information).
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4

Protein Expression Analysis by Western Blot

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After 24 h, cells were harvested and dissolved in lysis buffer (100 mM Tris-HCl, pH 6.8, 4% SDS, 20% glycerin, and 200 mM dithiothreitol). Protein concentration was measured using the Pierce BCA Protein Assay Kit (Thermo Scientific, Waltham, MA, USA) according to the manufacturer’s instructions. Samples were mixed with Laemmle’s loading buffer and boiled for 7 min. Equal amounts (20–40 µg) of protein extracts were loaded to sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE, 12% gel) at 100 mV, followed by blotting onto nitrocellulose membranes for 1 h 50 min at 110 V on ice. After transfer, nitrocellulose membranes stained with Ponceau S. Membranes were blocked for 1 h with 5% nonfat milk (AppliChemGmbH, Darmstadt, Germany, A0830) in tris-buffered saline (TBS) at room temperature, probed overnight with the appropriate primary antibodies (1:3000–1:5000) and followed by incubation with horseradish peroxidase-conjugated secondary antibodies (Cell Signaling Technology, anti-mouse 7076S or anti-rabbit 7074S, 1:4000) for 1 h with 2.5% nonfat milk in Tris-buffered saline (TBS) at room temperature. Detection was visualized with ECL (Amersham Biosciences, Piscataway, NJ, USA) and ChemiDoc MP Imaging System (BioRad). The quantitative analysis of Western blot data was accomplished using ImageJ Software (NIH, Bethesda, Rockville, MD, USA).
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5

Alectinib and Doxorubicin Cytotoxicity Assay

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Alectinib (HY-13011) was purchased from MedChem Express (NJ 08852, USA). Doxorubicin (Dox, D1515) and anti-β-Actin antibody (A2228) were purchased from Sigma (Sigma-Aldrich Corp, St. Louis, MO, USA). Anti-PARP (9532 S), anti-Caspase-3 (9662S), anti-phospho-Akt (4060S), anti-Akt (9272), anti-phospho-S6 (4858S), anti-S6 (2217S), anti-Mouse (7076S) and anti-Rabbit (7074S) antibodies were purchased from Cell Signaling Technology (Cell Signaling Technology, Danvers, MA, USA).
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6

Immunoblotting Procedure for Protein Analysis

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The immunoblotting was performed as previously described (29 (link)). To prepare the whole cell lysates, cells were collected and washed three times with ice-cold phosphate-buffered saline (PBS). Then, cells were lysed by adding RIPA lysis buffer (25 mM HEPES (pH 7.7), 135 mM NaCl, 3 mM EDTA, 1% Triton X-100, 25 mM β-glycerophosphate, 0.5 mM phenylmethylsulfonylfluoride, 1 mM dithiothreitol, 10 μg/ml leupeptin, 1 mM Benzamidine). After centrifuging the lysate at 13,000 g for 15 min at 4°C, protein concentration was measured by Bradford Assay. Cell lysates were resolved with SDS-PAGE and transferred to PVDF membranes. The membranes were probed with appropriate primary antibodies at 4°C overnight and the IgG horseradish peroxidase-conjugated secondary antibodies at room temperature for 1 hour. The proteins were detected using the ECL-Plus Western blotting detection system (Amersham Biosciences) and visualized by autography. Anti-USP14 (A300–920A) was purchased from Bethyl Laboratories. Anti-PARP (9532S), anti-Caspse3 (9662), anti-HSP70 (4872S), anti-HSP40 (4871S), anti-mouse (7076S) and anti-rabbit (7074S) were from Cell Signaling Technology. Anti-β-actin (A2228) was from Sigma-Aldrich. Anti-Ubiquitin (linkage-specific K48) was obtained from Abcam (ab140601).
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7

Antioxidant and Cell Viability Assessment

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TMT, ascorbic acid, dimethyl sulfoxide (DMSO), 2′,7′-dichlorofluorescein diacetate (DCF-DA), 2′,3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), lactate dehydrogenase (LDH) assay kit, superoxide dismutase (SOD) assay kit, and all other chemicals were purchased from Sigma-Aldrich Chemical Co. (St. Louis, MO, USA). Phosphoprotein kinase B (p-Akt; Ser 473; 9271S), BAX (2772S), and anti-rabbit (7074S) and anti-mouse (7076S) antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Phospho-c-Jun N-terminal kinases (p-JNK; sc-6254), cytochrome c (sc-13560), p-tau (Ser 404; sc-12952), and β-actin (sc-69879) antibodies were obtained from Santa Cruz Biotechnology (Dallas, TX, USA).
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8

Western Blot Analysis of c-Myc Protein

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Cell lysates were resolved on an SDS-PAGE gel followed by immunoblotting with two different antibodies against c-Myc. Recombinant Anti-c-Myc antibody (ab32072, Abcam, 1:1000 dilution) or c-Myc Rabbit mAb (18,583, Cell Signaling Technology, 1:1000 dilution) were used as primary antibodies, and anti-rabbit (7,074 s, Cell Signaling Technology, 1:5000 dilution) was used as the secondary antibody. β-actin Rabbit mAb (8,457 s, Cell Signaling Technology, 1:1000 dilution) was used for loading control.
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9

Western Blotting Protocol for Detecting Innate Immune Signaling Proteins

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For western blotting, cells were harvested in lysis buffer containing 50 mM Tris (pH 7.4), 150 mM NaCl, 30 mM NaF, 5 mM EDTA, 10% (v/v) glycerol, 40 mM β-glycerophosphate, 1% (v/v) Triton X-100, 1 mM sodium orthovanodate, 0.1 mM phenylmethanesulfonylfluoride and 0.07 μM aprotinin. Proteins were separated by SDS–PAGE and transferred to polyvinylidene (PVDF) membranes using semi-dry transfer. Membranes were blocked with 5% (w/v) non-fat milk in PBS containing 0.1% (v/v) Tween-20 (PBS-T) for 1 h before incubation with antibodies. Western blots using antibodies against phosphorylated proteins were performed with TBS containing 0.1% (v/v) Tween-20 and 5% bovine serum albumin (BSA).
The antibodies used were anti-IFI16 (1G7, Santa Cruz Biotechnology), anti-cGAS (HPA031700, Sigma Aldrich), anti-STING (D2P2F, Cell Signaling Technology), anti-TBK1 (D1B4, Cell Signaling Technology), anti-IRF3 (D6I4C, Cell Signaling Technology), anti-β-actin (A2228, Sigma Aldrich), anti-phospho(Ser172)-TBK1 (D52C2, Cell Signaling Technology) and anti-phospho(Ser396)-IRF3 (4D4G, Cell Signaling Technology). Primary antibodies were used at a dilution of 1:1,000. Secondary horse radish peroxidase-coupled anti-mouse (7076 S) and anti-rabbit (7074 S) antibodies were from Cell Signaling Technology and used at a dilution of 1:3,000. Full immunoblots including size markers are shown in Supplementary Fig. 6.
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10

Western Blot Analysis of Liver Proteins

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Total liver tissue lysates were fractioned by 10% acrylamide gel. The proteins were then transferred to a nitrocellulose membrane and blocked in 5% milk protein diluted in TBST (0.1%) for 1 h. All primary Ab incubations were overnight: NF-κB p65 (8242s; Cell Signaling Technology), acetyl–NF-κB p65 (Lys310) (3045s; Cell Signaling Technology), β-actin (A5441; Sigma-Aldrich), acetyllysine (ab80178; Abcam), IKBα (4814S; Cell Signaling Technology), Sirt1 (07-131; MilliporeSigma), PPAR γ coactivator-1a1 (PGC-1α; NBP1-04676; Novus Biologicals), and PBEF (nicotinamide phosphoribosyltransferase [NAMPT]) (sc-393444; Santa Cruz Biotechnology). Next day, membranes were washed in TBST and incubated with secondary Abs (anti-mouse (A4416; Sigma-Aldrich) and anti-rabbit (7074S; Cell Signaling Technology) for 1 h. Proteins were detected with chemiluminescence (Amersham Bioscience).
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