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10 protocols using hydrofluoric acid hf

1

Fabrication of Chikungunya Virus E2 Protein Sensor

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Single-side polished, boron-doped p-type silicon wafers (⟨100⟩, 0.01–0.02 Ω cm, 500–550 μm) were purchased from Pure Wafer, WRS Materials Company. Hydrofluoric acid (HF) was purchased from Acros Organics. 1,8-nonadiyne, 97%, was purchased from Alfa Aesar. The E2-binding peptide was synthesized as described in Section 2.4. Recombinant, non-glycosylated Chikungunya virus E2 protein was purchased from ImmunoDX, LLC.
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2

SigmaMAb Antibody Standard Protocol

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The SILu Lite SigmaMAb universal antibody standard human (MSQC4), Pharmalyte 3–10, ammonium persulfate, ammonium acetate, ammonium formate and ammonium bicarbonate were purchased from Millipore Sigma Inc. (St Louis, MO, USA). Micro Bio-Spin™ P-6 gel columns were purchased from Bio-Rad Laboratories (Hercules, CA, USA). Hydrofluoric acid (HF) and acrylamide were purchased from Acros Organics (NJ, USA). The fused silica capillary (50 μm i.d., 360 μm o.d.) was purchased from Polymicro Technologies (Phoenix, AZ).
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3

Mammalian Cell Lysis and Protein Extraction

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Bovine pancreas TPCK-treated trypsin, bovine serum albumin (BSA), urea, ammonium bicarbonate (NH4HCO3), dithiothreitol (DTT), iodoacetamide (IAA), octyl β-D-glucopyranoside, and angiotensin II (human, Asp-Arg-Val-Tyr-Ile-His-Pro-Phe) were purchased from Sigma–Aldrich (St. Louis, MO). Acetonitrile (ACN), acetic acid, formic acid (FA), and hydrofluoric acid (HF) were purchased from Fisher Scientific (Pittsburgh, PA). Methanol and water were purchased from Honeywell Burdick & Jackson (Wicklow, Ireland). Fused silica capillary (30 μm i.d./150 μm o.d.; 158 μm i.d./360 μm o.d.) and linear polyacrylamide (LPA) coated capillary (30 and 50 μm i.d./150 μm o.d.) were purchased from Polymicro Technologies (Phoenix, AZ).
Mammalian Cell-PE LB buffer for cell lysis was purchased from G-Biosciences (St. Louis, MO). Complete, mini protease inhibitor cocktail (provided in EASYpacks) was purchased from Roche (Indianapolis, IN).
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4

Synthesis of Gold Nanoparticles Using Chitosan

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Titanium (Ti) foil, dimethyl sulfoxide (DMSO), chloroauric acid hydrate (HAuCl4·H2O), sodium citrate (Na3C6H5O7), sodium borohydride (NaBH4, 98%), chitosan (crab shells), acetic acid (CH3COOH, 99%), sodium phosphate monobasic (NaH2PO4, 99%) and sodium phosphate dibasic (Na2HPO4, 99%), sodium hydroxide (NaOH) pellet, hydrochloric acid (HCl), and hydrogen peroxide (H2O2, 30 wt%) were purchased from Sigma-Aldrich (St. Louis, MI, USA). Hydrofluoric acid (HF, 49%) was purchased from Fisher Chemical (Waltham, MA, USA). The Difco™ Lactobacilli MRS Agar and Lactobacilli MRS broth were purchased from Merck Millipore (Darmstadt, Germany). H2O2 was preserved at 4 °C. Ultrapure water (18 MΩ·cm) purified with a Nanopure® water system (Merck, Germany) was used to prepare all experiment solutions. All the reagents were of analytical grade.
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5

Bovine Pancreas Trypsin Digestion

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Bovine pancreas TPCK-treated trypsin, IgG standard from human serum (I4506), haptoglobin standard from human plasma (Hpt, H3536), urea, dithiothreitol (DTT), iodoacetamide (IAA), trifluoroacetic acid (TFA), and formic acid (FA) were purchased from Sigma-Aldrich (St. Louis, MO). Acetonitrile (ACN) and hydrofluoric acid (HF) were purchased from Fisher Scientific (Pittsburgh, PA). Methanol and water were purchased from Honeywell Burdick & Jackson (Wicklow, Ireland).
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6

Proteomic Sample Preparation Reagents

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Bovine pancreas TPCK-treated trypsin, bovine serum albumin (BSA), ubiquitin, cytochrome c, myoglobin, carbonic anhydrase, superoxide dismutase, alpha casein, ammonium bicarbonate (NH4HCO3), dithiothreitol (DTT), iodoacetamide (IAA), and amino acids (Gly, Pro, Cys, Ile, Leu, Asp, Lys, Glu, His, Phe, and Arg) were purchased from Sigma-Aldrich (St. Louis, MO USA). Acetonitrile (ACN), acetic acid, formic acid (FA), and hydrofluoric acid (HF) were purchased from Fisher Scientific (Pittsburgh, PA USA). Methanol was purchased from Honeywell Burdick and Jackson (Wicklow, Ireland). Water was deionized by a NanoPure system from Fisher Scientific. Complete mini protease inhibitor cocktail (provided in EASYpacks) was purchased from Roche (Indianapolis, IN USA). Fused silica capillaries (50 μm ID/360 μm OD and 30 μm ID/360 μm OD) were purchased from Polymicro Technologies (Phoenix, AZ).
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7

Synthesis of Ti3Al(CN) Powder

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Example 7

Ti3Al(CN) powder was prepared was made by ball milling Ti:AlN:C=3:1:1 (molar ratios) for 12 hours, then heating the mixture at 10° C./min to 1500° C., holding 2 hours, then cooling, all under Argon (C and Ti powders were purchased from Alfa Aesar, Ward Hill, Mass.). AN powder was purchased from Sigma-Aldrich. The resulting material was crushed using mortar and pestle. The resulting powder was immersed and stirred in 30% concentrated hydrofluoric acid, HF, (Fisher Scientific, Fair Lawn, N.J.) solution at room temperature for 18 h. The resulting suspension was then washed several times using deionized water and centrifuged to separate the powders. SEM micrographs and XRD spectra of the resulting materials are shown in FIGS. 11-13.

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8

Synthesis of Mesoporous Carbon Materials

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In the synthesis of carbons, sucrose (Carlo Erba), tetraethyl orthosilicate (TEOS) (Acros Organics), triblock copolymer (Pluronic P123 MW = 5800, Sigma Aldrich), n-butanol (VWR Chemicals), and sulfuric acid (H2SO4) (Fluka) were used as the carbon source, silica source, structure directing agent, cosolvent, and catalyst, respectively. Hydrochloric acid (HCl) (Merck) was used to provide the acidic medium and hydrofluoric acid (HF) (Fisher Chemical) was used to remove silica. All of the chemicals used in the study were analytical grade and they were used as received.
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9

Bovine Trypsin Plasma Protein Analysis

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Bovine pancreas TPCK-treated trypsin (T1426), α1-Acid Glycoprotein (AGP, human plasma), dithiothreitol (DTT), iodoacetamide (IAA), trifluoroacetic acid (TFA), and formic acid (FA) were purchased from Sigma-Aldrich (St. Louis, MO). Acetonitrile (ACN) and hydrofluoric acid (HF) were purchased from Fisher Scientific (Pittsburgh, PA). Methanol and water were purchased from Honeywell Burdick & Jackson (Wicklow, Ireland).
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10

Sediment Dissolution and Elemental Analysis

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Sediment samples were first pre-grinded, sieved through 2-mm sieves and homogenized. Sub-samples of 0.25 g were accurately weighed using an analytical balance, 10 mL of conc. Hydrofluoric acid (HF, 47–51%, Fisher Chemicals, Waltham, MA, USA, Trace Metal Grade) was added and the mixtures were left for 24 h. Subsequent dissolution was performed using a sand bath after adding an additional amount of 10 mL conc. HF (47–51%, Fisher Chemicals, Waltham, MA, USA, Trace Metal Grade) and 5 mL conc. Perchloric acid (HClO4, 70% Fisher Chemicals, Waltham, MA, USA, Trace Metal Grade). The samples were heated until the acid mixture was reduced to 1/3 of the initial volume. Then portions of 10 mL conc. HF were added and heating in a sand bath was performed until complete dissolution of the sediments. Then two portions of 10 mL conc. Nitric acid (HNO3, 67–69%, Fisher Chemicals, Waltham, MA, USA, Trace Metal Grade) were added and the samples were heated in a sand bath until the volume was reduced to 0.5–1 mL. After cooling, the samples were quantitatively transferred to 50 mL polyethylene tubes by repeated washing with double deionized water. All samples were initially diluted to 50 mL, and immediately before instrumental measurement, an additional dilution of 1 mL to 14 mL was performed.
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