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5 protocols using anti ly6g ly6c

1

Immunohistochemical Analysis of Colorectal Cancer

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Human colorectal cancer tissues were obtained from US Biomax. The staining procedure for paraffin‐embedded mouse and human tissues were as previously described (Mu et al, 2018 (link)). Tissue staining was semi‐quantitatively scored on a 0–9 scale by multiplying the score for the proportion of positively stained tumor cells (0, < 10%; 1, 10–25%; 2, 26–50%; 3, > 50%) by the staining intensity score (0–3) as previously defined (Wang et al, 2021 (link)). For the comparison of low/high PCIF1 expression and patient survival, overall survival was defined as the time between date of diagnosis and death. Primary antibodies used in IHC include anti‐PCIF1 (Invitrogen, PA5‐61996), anti‐FOS (Abcam, ab222699), anti‐Ki‐67 (Cell Signaling Technology, 12202T), anti‐Ly‐6G/Ly6C (Invitrogen, 14‐5931‐81), and anti‐NK1.1 (Invitrogen, MA1‐70100).
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2

Murine Bone Marrow Cell Isolation and Immunophenotyping

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Bone marrow was isolated from tibia and femur of mice and erythrocytes were lysed. To sort pre-progenitor cells staining for linage markers anti-CD3e (Cat # 45-0031-80, eBioscience, 1:50), anti-GR1 (Cat # 108428, BioLegend, 1:400), anti-Mac-1 (Cat # 101228, BioLegend, 1:400), anti-CD4 (Cat # 101228, BioLegend, 1:200), anti-CD8a (Cat # 100734, BioLegend, 1:100), anti-TCRb (Cat # 109228, BioLegend, 1:100), anti-NK1.1 (Cat # 45-5941-82, eBioscience, 1:100), anti-B220 (Cat # 103236, BioLegend, 1:100) and anti-CD19 (Cat # 115534, BioLegend, 1:200) was performed. Additionally anti-CD16/32 (Cat # 101305, BioLegend, 1:200), anti-CD41 (Cat # 133906, BioLegend, 1:100), anti-Sca-1 (Cat # 108114, BioLegend, 1:200), anti-c-kit (Cat # 47-1171-82, Invitrogen, 1:50), anti-CD105 (Cat # 120412, BioLegend, 1:50) and anti-CD150 (Cat # 115910, BioLegend, 1:400) were stained to further classify cells. To sort immature granulocytes, mature granulocytes and monocytes anti-Ly6G/Ly6C (Cat # 17-5931-82, Invitrogen, 1:100), anti-CD11b (Cat # 25-0112-82, eBioscience, 1:100) and anti-CD115 (Cat # 11-1031-85, eBioscience, 1:100) were used. Gating strategy was performed as shown in Supplementary Fig 5.
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3

Flow Cytometry Analysis of Myeloid Cells

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LNs and spleen tissues were prepared using mechanical dissociation of minced tissue to obtain single cell suspensions. The following antibodies were used for flow cytometry: anti-Ly6G/Ly6C (Cat #58-5931-82), anti-Cd11b (Cat #12-0112-82), anti-CD86 (Cat #11-0862-82), anti-F4/80 (Cat #17-4801-82), anti-MHCII (Cat #13-5321-82), and anti-CD11c (Cat #11-0116-42) all from eBioscience, San Diego, CA) and anti-CD206 (clone MR5D3; BioRad). After being stained with a standard protocol, all events were analyzed with FlowJo software (FlowJo, LLC, Ashland, OR) and frequencies among live cells were obtained.
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4

Profiling Prostate Cell Populations by Flow Cytometry

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Single cells isolated from a prostate were incubated with an anti-CD16/32 antibody (BD Pharmingen; 1:50) for 15 min on ice and with an antibody cocktail for 15 min on ice. The antibody cocktail included anti-CD326 (EpCAM) [BioLegend; reference: 118216; conjugation: phycoerythrin (PE)/Cy7], anti-CD45 (BioLegend; reference: 103128; conjugation: Alexa Fluor 700), anti-CD11b [eBioscience; reference: 45-0112-82; conjugation: peridinin chlorophyll protein (PerCP)–Cy5.5], and anti–Ly-6G/Ly-6C [eBioscience; reference: 11-5931-82; conjugation: fluorescein isothiocyanate (FITC)]. All antibodies were diluted 1:200 in DMEM [glucose (4.5 g/liter), 1% P/S, and 2% bovine serum albumin (BSA), without phenol red]. Samples were analyzed by a BD LSR II flow cytometer and the FlowJo software. The antibody cocktail enabled the quantification of epithelial cells (EpCAM+; CD45), leukocytes (CD45+), stromal cells (EpCAMCD45), and MDSCs [CD45+CD11b+Ly-6G/Ly-6C (Gr-1)+].
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5

Flow Cytometry Analysis of Immune Cells

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Dissociated prostates were incubated with anti-CD16/32 antibody (BD Pharmingen; 1:50) for 15 min on ice. To quantify total leukocytes (CD45+) and MDSCs (CD11b+Gr-1+), cells were incubated with anti-CD45 (BioLegend; ref. 103128; conjugation: Alexa Fluor 700), anti-CD11b (eBioscience; ref. 45-0112-82; conjugation: PerCP-Cy5.5), and anti–Ly-6G/Ly-6C (Gr-1) [eBioscience; ref. 11-5931-82; conjugation: fluorescein isothiocyanate (FITC)] antibodies for 15 min on ice. All antibodies were diluted 1:200 in DMEM [glucose (4.5 g/liter), 1% P/S, and 2% bovine serum albumin, without phenol red].
To quantify CD8+ T cells (CD3+CD8+) and NK cells (CD3CD49b+NK1.1+), samples were incubated with anti-CD3ε (BioLegend; ref. 100328; conjugation: PerCP/Cy5.5; dilution 1:50), anti-CD8a (eBioscience; ref. 56-0081-80; conjugation: Alexa Fluor 700; dilution: 1:100), anti-CD49b (eBioscience; ref. 11-5971-82; conjugation: FITC; dilution: 1:100), and anti-NK1.1 (eBioscience; ref. 25-5941-82; conjugation: PE-Cyanine7; dilution: 1:100) antibodies for 15 min on ice. Cells were analyzed using a BD LSR II flow cytometer and the FlowJo software.
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