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8 protocols using human cxcl12

1

Visualizing CXCR7-Mediated β-Arrestin Recruitment

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HEK293 cells (ATCC CRL-11268) were used for the β-arrestin recruitment assay, as previously described52 (link). In brief, HEK293 cells were transfected with human β-arrestin-2-ω and human CXCR7-α. The cells were stimulated with human CXCL12 (R&D Systems, Minneapolis, MN, USA) or TC14012 at 37 °C for 90 min and then, Gal-Screen (Thermo Fisher Scientific) was added and the cells were further incubated at 25 °C for 90 min. Luminescence was measured in an ARVO X3 plate reader (PerkinElmer, Waltham, MA, USA). In addition, HEK293 cells were transfected with a rat CXCR7 expression plasmid using Lipofectamine 3000 (Thermo Fisher Scientific). The CXCR7 expression plasmid was synthesized by amplifying a rat Cxcr7 mRNA sequence (RefSeq: NM_053352.1) with a FLAG tag (forward primer: 5′-TTTTGCGGCCGCGCCACCATGGATTACAAGGACGATGACGACAAGGGAGGAGGCTCCGATGTGCATCTGTTTGAC-3′, reverse primer: 5′-TTTTAAGCTTTCACTTGGTGTTCTGCTC-3′) from cDNA prepared from total RNA isolated from neonatal rat heart and inserting it in pShuttle-CMV (#16403, Addgene, Watertown, MA, USA). The cells were cultured for 36 h. After 12 h of starvation, the cells were stimulated with CXCL12.
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2

CXCL12 Quantification by ELISA

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The concentrations of CXCL12 in serum and cell culture supernatant were determined using a commercially available ELISA kit (human CXCL12; R&D Systems, Minneapolis, MN, USA) according to the manufacturer’s instructions.
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3

Exploring Signaling Pathways with Recombinant Proteins

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All recombinant proteins were purchased from R&D Systems, reconstituted as per the manufacturer's instructions and used at the following concentrations: Human CCL2 (R&D Systems, 279-MC-010, 100 ng/mL), human CHI3L1 (R&D Systems, 2599-CH-050, 100 ng/mL), human CXCL12 (R&D Systems, 350-NS-010, 100 ng/mL), human IGFBP3 (R&D Systems, 675-B3-025, 100 ng/mL), human PTX3 (R&D Systems, 1826-TS-025, 1 μg/mL), and mouse Wnt3a (R&D Systems, 1324-WN-010, 25 ng/mL). Cells were incubated in serum-free media for 6 hours before treatment with recombinant proteins. Cells were then treated for 18 hours with serum-free media containing the appropriate recombinant protein with or without the STAT6 inhibitor AS 1517499 (Axon Medchem, 1992-10MG, 50 nmol/L). For Wnt3a treatments, 72 hours incubation was used, and media changed with fresh treatment at 24 and 48 hours after initial treatment.
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4

Antibody-Based Protein Interactions

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Human E-selectin/Fc, human ICAM-1/Fc and human CXCL12 were from R&D Systems (R&D Systems, Minneapolis, MN, USA); fluorescein isothiocyanate (FITC) goat secondary antibody to mouse was from Sigma (Sigma-Aldrich, St. Louis, MO, USA); KIM127 mouse monoclonal antibody was from American Type Culture Collection (ATCC, Rockville, MD, USA); 327C and A mouse monoclonal antibodies were kindly provided by dr. Kristine Kikly (Eli Lilly and Co., Indianapolis, IN, USA); Tyrphostin AG490 and rabbit polyclonal anti-actin antibody were from Sigma; rabbit monoclonal anti-JAK2 (D2E12), was from Cell Signaling Technology (Danvers, MA, USA); siRNAs (ON-TARGETplus SMARTpool) were from Thermo Fisher Scientific (Fremont, CA, USA).
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5

Immune Cell Adhesion Protein Assay

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Human E-selectin/Fc, human ICAM-1/Fc, human VCAM-1/Fc and human CXCL12 were from R&D Systems (R&D Systems, Minneapolis, MN, USA); goat anti-human IgM was from SouthernBiotech (SouthernBiotech, Birmingham, AL, USA); fluorescein isothiocyanate (FITC) goat secondary antibody to mouse was from Sigma (Sigma-Aldrich, St. Louis, MO, USA); KIM127 mouse monoclonal antibody was from American Type Culture Collection (ATCC, Rockville, MD, USA); 327A mouse monoclonal antibody was kindly provided by Dr. Kristine Kikly (Eli Lilly and Co., Indianapolis, IN, USA); goat F(ab’)2 anti-human IgM was from Southern Biotech (Southern Biotech, Birmingham, AL, USA); Tyrphostin and rabbit polyclonal anti-actin antibody were from Sigma; Ibrutinib was from Selleck Chemicals (Selleck Chemicals, Houston, TX, USA); PE mouse anti-BTK (pY223) antibody was from BD Biosciences (BD Biosciences, San Jose, CA, USA); rabbit monoclonal anti-JAK2 (D2E12) was from Cell Signaling Technology (Danvers, MA, USA); siRNAs (ON-TARGETplus SMARTpool) were from Thermo Fisher Scientific (Fremont, CA, USA).
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6

Stimulation of Human B Cells

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Cryopreserved PBMCs from volunteers were thawed, washed twice and enriched for total B cells as described in section Flow Cytometry Characterization of B cells obtained from CAVA subjects. Enriched B cells were cultured in 200 μL of complete RPMI with 20 ng/mL human IL-4 (R&D system), ± 10 μg/mL agonistic anti-human CD40 mAb (ThermoFisher; clone 5C3), ± 20 ng/mL human CCL20 (R&D system), ± 100 ng/mL human CXCL12 (R&D system) ± 10 nM CCR6 inhibitor 1 (MedChemExpress) ± 5 uM AMD3100 (Sigma) for 10 days in Corning Costar 96-well flat bottom plates. Levels of proliferation and immunoglobulin class switching to IgG and IgE produced by human B cells were determined, before and up to 10 days after stimulation, by using flow cytometry with mAbs as listed in Supplementary Table 3. Cells were acquired on Cytek Aurora and the analysis was performed using FCS Express 7. The gating strategy is presented in Supplementary Figure 1.
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7

Visualizing T-cell Chemotaxis with TIRF Microscopy

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Isolated human CD8+ T cells were nucleofected with plasmid expressing Lifeact-GFP using Nucleofector II and Mouse T-cell Nucleofector Kit (Lonza) 1 d before imaging. Glass bottom dishes (MatTek) were coated with 0.2 mg/mL PLL-PEG at 4 °C overnight and afterwards rinsed with PBS to remove residual PLL-PEG. 500 μl of 0.5% agarose (Biozym Gold Agarose) solution containing 100 ng/ml human CXCL12 (R&D) were poured onto the coated dishes. Cells were injected between the glass and the solidified agarose layer as described above.
Total internal reflection (TIRF) microscopy was performed at 37 °C with an inverted Axiovert 200 (Zeiss) microscope, a TIRF 488/561-nm laser system (Visitron systems) and an EvolveTM EMCCD camera (Photometrics) triggered by VisiView software (Visitron). FIJI image processing package was used for image and kymograph analysis.
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8

Confined Migration of Human CD8+ T Cells

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Human CD8+ T cells were purified using MagniSort Human CD8+ T-cell Enrichment Kit (eBioscience) and labeled with 5 μM CMTMR (Invitrogen) 1 d before imaging and incubated with 1 μM lenalidomide or DMSO for 24 h, and recorded migrating confined under agarose block. Briefly, home-made glass bottom dishes were coated with 2 μg/ml human ICAM-1 Fc (R&D) at 4 °C overnight and afterwards rinsed with PBS to remove residual, unbound protein. 500 μl of 0.5% agarose (Biozym Gold Agarose) solution containing 100 ng/ml human CXCL12 (R&D), 50 μM ascorbic acid and fully supplemented R10 medium (RPMI 1640, 10% FCS, glutamine, non-essential amino-acids, β-mercaptoethanol) were poured onto the coated dishes to form approximately 3-mm thick layer and allowed to solidify for 1 h at 4 °C. Finally, dishes were equilibrated for 30 min in a humidified incubator at 37 °C, 5% CO2 and cells were injected between the glass and the agarose layer. Cells were recorded at 37 °C on Nikon Eclipse Ti inverted microscope equipped with Hamamatsu EMCCD C9100-02 camera and tracked using Volocity software (PerkinElmer).
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