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13 protocols using ba0056

1

Western Blotting Analysis of Hippocampal Proteins

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After the behavioral experiment, three mice were randomly selected from each group for Western blotting. The brain tissue of the mice was quickly removed and the hippocampus tissue was separated at low temperature. The treated brain tissue requires extraction of histones at low temperature, followed by grinding and centrifugation of the sample. The protein concentration of the sample is determined from the standard curve and then heated to denature the proteins of the sample. Electrophoresis and membrane transfer are then performed. We use the first antibody to react with the PVDF membrane overnight, put down the second antibody the next day and finally rinse with PBS solution. The gels were then scanned using an automated gel imaging system and analysed for calculation using ImageJ software. Main antibodies and dilution ratio: Anti-Akt (ab81283, Abcam, 1:1000); Anti-beta Amyoid 1-42 (ab201060, Abcam, 1:1000); Anti-IL-1beta (ab9722, Abcam, 1:800); Anti-IL-10 (ab9969, Abcam, 1:800); Anti-PI3K (ab191606, Abcam, 1:1000); Anti-GFAP (BA0056, BOSTER, 1:800); Anti-IBA-1 (PB0517, BOSTER, 1:800); Anti-Beclin1 (ab207612, Abcam, 1:1000); Anti-LC3 (ab192890, Abcam, 1:1000); Anti-p-Akt (ab8805, Abcam, 1:1000); Anti-β-actin (GB12001, Servicebio, 1:2000).
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2

Analyzing Stem Cell Markers by Western Blot

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The GSCs were lysed with RIPA buffer (Beyotime Institute of Biotechnology, Shanghai, China) containing protease and phosphatase inhibitors for 30 min at 4 °C. Then the supernatants were collected after centrifugation at 12,000 rpm at 4 °C for 15 min. The supernatants were mixed with loading buffer (Boster, Wuhan, China), and equal amounts of protein were separated by sodium dodecyl sulfate–polyacrylamide gel electrophoresis, and then transferred to PVDF membranes. The PVDF membranes were blocked and incubated with the primary antibodies at 4 °C overnight. The primary antibodies were used at the following dilutions: rabbit anti-β-actin (1:2000; #4970, CST), mouse anti-β-III tubulin (1:1000; #4466, CST), rabbit anti-GFAP (1:1000; BA0056, Boster), mouse anti-sox2 (1:1000; ab171380, Abcam), rabbit anti-CD133 (1:1000; ab19898, Abcam), rabbit anti-H3 (1:1000; #4499, CST), rabbit anti-OCT4 (1:1000; ab18976, Abcam), rabbit anti-acetyl-H3 (1:1000; #06-599, Millipore), rabbit anti-H3K27me3 (1:1000; #9733, CST), mouse anti-H3K9me3 (1:1000; #5327, CST), rabbit anti-EZH2 (1:1000; #5246, CST). After washing with TBST, the membranes were incubated with HRP-conjugated goat anti-mouse or goat anti-rabbit secondary antibodies at room temperature. The antibody labeling was detected using an enhanced chemiluminescence reagent (Merck Millipore). The protein bands were analyzed using ImageJ.
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3

Immunohistochemical Staining of Spinal Cord

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Antigen retrieval for spinal cord sections was carried out in citrate buffer (0.01 M, pH 6.0) for 40 min at 99°C in a water bath. Endogenous peroxidase activity was inhibited by incubating in 3% H2O2 solution for 10 min at RT. Non-specific binding sites were blocked using normal goat serum (AR0009, Boster) for 30 min at RT. Sections were thereafter incubated with rabbit polyclonal anti-glial fibrillary acidic protein (GFAP, 1:500, BA0056, Boster), mouse monoclonal anti-βIII-tubulin (1:200, sc-80016, Santa Cruz), mouse monoclonal anti-cell adhesion molecule L1 (1:200, MAB777, R&D Systems), rabbit polyclonal anti-mTOR (1:200, sc-8319, Santa Cruz), mouse monoclonal anti-p53 (1:1000, sc-98, Santa Cruz), or mouse monoclonal anti-PTEN (1:100,sc-7974, Santa Cruz) antibodies overnight at 4°C. After washing in PBS three times for 5 min each at RT, sections were visualized with a DAB Detection Kit (PV-9000-D, ZSGB-Bio, Beijing, China) and then stained in the dark using a 3-amino-9-ethylcarbazole (AEC) kit (0037, Maixin Biotech, Fuzhou, China) according to the manufacturer's protocols. Stained sections were mounted in water-soluble mounting medium (AR1018, Boster). IHC images were taken under a light digital microscope (DM-117M, Jiangnan, Jiangsu, China) 24 h after the slides were mounted.
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4

Immunohistochemical Analysis of Brain Tissue

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After appropriate survival times, animals were deeply anesthetized with pentobarbital sodium (100 mg/kg, i.p.) and perfused with normal saline, followed by 4% paraformaldehyde (PFA). After the perfusion, the brain was removed and post-fixed in 4% PFA overnight and then dehydrated in 30% sucrose for 48 h. Brain tissue sections (30 μm) were cut in a cryostat (CM 3050S, Leica). After rinsing with 0.5% Triton-X 100 in PBS for 30 min, brain sections were blocked with 5% donkey serum for 2 h at room temperature and then incubated overnight at 4 °C with the following primary antibodies: anti-GFAP antibody (rabbit, 1:400, BA0056, Boster), anti-GFAP antibody (mouse, 1:400, G3893, Sigma), anti-NeuN (rabbit, 1:400, MABN140, Millipore), anti-ATP1A2 antibody (rabbit, 1:300, PA5-77512, Invitrogen). After washing, the sections were incubated with Alexa Fluor™ 488/594/647 secondary antibody (1:1000, Molecular Probes) for 2 h at room temperature. After rinsing the sections, we mounted the sections on slides using Vectashield Mounting Media (Vector Labs). The stained sections were examined with a Leica SP8 confocal microscope.
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5

Immunohistochemical Analysis of Neural Markers

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Six weeks after transplantation, the rats were sacrificed by injection of sodium pentobarbital, and the brain tissues were fixed with 4% paraformaldehyde. After being immersed in 15% and 30% sucrose in PBS, the brain tissues were sliced with a freezing microtome (20 μm thick). Cultured cells were fixed with 4% paraformaldehyde in PBS for 20 min at room temperature. The fixed cells and brain sections were then permeabilized with 0.5% Triton X‐100 for 15 min at 37°C, blocked in 10% goat serum for 30 min at 37°C, and incubated overnight at 4°C with primary antibodies. They were then incubated with secondary antibodies in the dark at room temperature for 1 h. Then, the stained samples were counterstained with DAPI (P0131, Beyotime Biotechnology) and observed with a laser scanning confocal microscope. Images were taken with ZEN 2 software. The following antibodies were used: Nestin (1:50, abs137231, Absin, China), NSE (1:50, BA0535, Boster), GFAP (1:50, BA0056, Boster), CCR5 (1:50, sc‐17,833, Santa Cruz Biotechnology), TH (1:500, ab112, Abcam), CCL5 (1:50, sc‐365,826, Santa Cruz Biotechnology), goat anti‐rabbit IgG H&L (Alexa Fluor® 488,1:1000, ab150077, Abcam), goat anti‐mouse IgG H&L (Alexa Fluor® 647,1:1000, ab150119, Abcam), and goat anti‐rabbit IgG H&L (Alexa Fluor® 647,1:1000, ab150079, Abcam).
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6

Immunofluorescent Characterization of Stem Cells

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Well-grown cell spheres were selected for growing on slides coated with polylysine. After drying at 37°C, the slides were washed with phosphate-buffered saline (PBS) three times. The cells were fixed with paraform for 30 min at room temperature, then washed with PBS a further three times. After blocking with 5% goat serum at 37°C for 30 min, primary monoclonal rabbit anti-human nestin (1:30; BA1289, Boster, Wuhan, China) diluted in 1% BSA was added and the cells were placed in a wet box overnight. Subsequently, the cells were washed with PBS, then secondary monoclonal goat anti-rabbit IgG-fluorescein isothiocyanate antibody (1:50; BA1105, Boster) diluted in 1% BSA was added for incubation for 30 min at 37°C. In addition, a negative control in which PBS was used instead of the primary antibody was performed. The slides were observed using an Olympus BX51 fluorescence microscope (Olympus Corporation, Tokyo, Japan). Immunofluorescent assays for glial fibrillary acidic protein (GFAP) and β-tubulin in the differentiated stem cells were conducted using an identical protocol as that used for nestin, with the exception of the respective antibodies. GFAP and β-tubulin were used to identify glioma cells. They were detected by immunofluorescence using monoclonal GAFP (1:30; BA0056; Boster) antibody diluted in 1% BSA and monoclonal β-tubulin (1:30; BM1453; Boster).
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7

Immunofluorescence Analysis of Mouse Brain

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After the behavioral experiment, three mice were randomly selected from each group for the immunofluorescence, they were perfused with 0.9% NaCl and 4% paraformaldehyde under isoflurane anesthesia. Mouse brain tissue was fixed in a 4% formaldehyde solution and then dehydrated in a gradient of 20% and 30% sucrose solution. The processed brain tissue is processed into slices with a thickness of 25 microns by a frozen slicer (Leica Microsystems, Wetzlar, Germany). The tissue sections were sequentially reacted with 0.3% TritonX-100, 10% goat serum, target primary and secondary antibodies to complete immunofluorescence staining. The main antibodies are: Anti-ß-amyloid (ab201060, Abcam, 1:200); Anti-GFAP (BA0056, BOSTER, 1:100); Anti-IBA1 (PB0517, BOSTER, 1:100); Goat Anti-Rabbit IgG (BM3894, BOSTER, 1:1000); Dnk pAb to Rb IgE (ab150073, Abcam, 1:1000). Finally the images were imaged using a fluorescent microscope and analysed using ZEN 2.0 software (Olympus, Japan).
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8

Immunofluorescence Analysis of Mouse Brain

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After the behavioral experiment, three mice were randomly selected from each group for the immunofluorescence, they were perfused with 0.9% NaCl and 4% paraformaldehyde under isoflurane anesthesia. Mouse brain tissue was fixed in a 4% formaldehyde solution and then dehydrated in a gradient of 20% and 30% sucrose solution. The processed brain tissue is processed into slices with a thickness of 25 microns by a frozen slicer (Leica Microsystems, Wetzlar, Germany). The tissue sections were sequentially reacted with 0.3% TritonX-100, 10% goat serum, target primary and secondary antibodies to complete immunofluorescence staining. The main antibodies are: Anti-ß-amyloid (ab201060, Abcam, 1:200); Anti-GFAP (BA0056, BOSTER, 1:100); Anti-IBA1 (PB0517, BOSTER, 1:100); Goat Anti-Rabbit IgG (BM3894, BOSTER, 1:1000); Dnk pAb to Rb IgE (ab150073, Abcam, 1:1000). Finally the images were imaged using a fluorescent microscope and analysed using ZEN 2.0 software (Olympus, Japan).
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9

Immunofluorescence analysis of GSCs

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GSCs were incubated on polylysine-coated coverslips. After 48 h of treatment with GO, the cells on the coverslips were treated with 4% paraformaldehyde for 30 min. The coverslips were washed with PBS, followed by permeabilization with 0.3% Triton X-100 for 30 min at room temperature. The coverslips were blocked with 10% goat serum. We performed incubation with anti-CD133 (1:200; PB0168, Boster) and anti-GFAP (1:200; BA0056, Boster) antibodies overnight, which was followed by incubation with secondary antibody for 1 h. The nuclear DNA was labeled with DAPI. Representative images were obtained with an IX71 Olympus fluorescence microscope.
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10

CNTs-SS Implantation and Neuroinflammatory Response

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All animal experimental protocols were approved by the Animal Care and Use Committee, Tongji Medical College, Huazhong University of Science and Technology (Wuhan, China). The C57BL/6J mice were anesthetized and a hole with a 4-mm diameter was drilled in the skull. Disk-shaped CNTs-SS with a diameter of 3 mm were implanted onto exposed brain surface of mice. After 14 days, the mice were anesthetized, perfused with 0.9% NaCl (w/v, distilled water) and then fixed with 4% paraformaldehyde (w/v, PBS). The fixed brains were embedded in paraffin and cut into 5-μm sections for immunofluorescence staining. The rabbit anti-mouse GFAP (1:100 diluted; BA0056, Boster, Wuhan, China) and rabbit anti-mouse IBA-1 (1:200 diluted; Ab178847, Abcam, MA, USA) were used to detect astrocytes and microglia, respectively.
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