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8 protocols using image multi gauge software

1

Protein Detection via SDS-PAGE and Western Blot

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Proteins were resolved by SDS-polyacrylamide gel electrophoresis, transferred to a PVDF membrane and detected using the appropriate primary and secondary antibodies before visualization with a Chemiluminescent HRP Substrate Kit (Millipore). Visualization was performed with Image Quant LAS-4000 (Fujifilm, Tokyo, Japan) using image Multi-Gauge Software (Fujifilm). Quantification was performed by Image J.
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2

Quantification of Liver Protein Expression

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About 50 mg of frozen mouse liver tissue samples were homogenised in 650 µL of TNE buffer (10 mmol/L Tris-HCl (pH 7.5), 1% Nonidet P40, 150 mmol/L NaCl, 1 mmol/L EDTA) containing a cocktail of protease and phosphatase inhibitors (Roche). Lysates were incubated at 4°C for 45 min and then centrifuged at 12 000 g for 5 min. Protein content was quantified in the supernatant using BCA Protein Assay (Thermo Fisher). Lysates were mixed with the reducing sample buffer (Bio-Rad) for electrophoresis and subsequently transferred onto polyvinylidene fluoride membranes (Thermo Fisher). Equal loading (50 µg) was verified using Ponceau red solution. Membranes were incubated with anti-PPARα (1:1000, Ab24509, Abcam) antibody. After secondary antibody incubation (anti-rabbit, 1:3000; Amersham, GE Healthcare, Courtaboeuf, France), immunodetection proceeded using an enhanced chemiluminescence kit (Clarity Western ECl Substrate, BioRad, France) and bands were revealed using the Las-4000 Imaging System and Image MultiGauge software (Fujifilm, Tokyo, Japan). After initial immunodetection, membranes were stripped of antibodies and reprobed with mouse anti-GAPDH antibody (1:20 000; Millipore) and secondary antibody (anti-mouse, 1:3000; Amersham GE healthcare).
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3

Western Blot Protein Detection Protocol

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Cells were lysed and immunoblotted as previously described47 (link). Briefly, proteins were resolved by SDS-polyacrylamide gel electrophoresis, transferred to a PVDF membrane (Millipore, Billerica, MA, USA) and then detected by the proper primary and secondary antibodies before visualization with a chemiluminescence kits (Biological Industries, Kibbutz Beth HaEmek, Israel). Visualization was done with Image Quant LAS-4000 (Fujifilm, Tokyo, Japan) using image Multi-Gauge Software (Fujifilm).
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4

Immunoblot Analysis of Cellular Proteins

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The cells were lysed and immunoblotted as previously described [43 (link)]. Briefly, proteins were resolved by SDS-polyacrylamide gel electrophoresis, transferred to a PVDF membrane (Millipore, Billerica, MA, USA) and were detected by the proper primary and secondary antibodies before visualization with a chemiluminescence kit (Biological Industries, Kibbutz Beth HaEmek, Israel). Visualization was performed with Image Quant LAS-4000 (Fujifilm, Tokyo, Japan) using image Multi-Gauge Software (Fujifilm).
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5

Quantifying TSLP and JAK/STAT Pathway in Mouse Liver

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Frozen mouse liver tissue samples (about 50 mg) were homogenized in 650 mL of TNE buffer (1 mmol/L EDTA, 1% Nonidet P40, 10 mmol/L Tris-HCl (pH 7.5), 150 mmol/L NaCl) containing a phosphatase inhibitors and cocktail of protease (Roche, Basel, Switzerland). The incubation condition was 4°C for 45 min and the centrifugation condition was at 12 000 g for 5 min. BCA Protein Assay (Thermo Fisher, MA, USA) was conducted to quantified protein content was quantified in the supernatant. Reducing sample buffer (Bio-Rad) was used to mix lysates for electrophoresis and subsequently the lysates were transferred onto polyvinylidene fluoride membranes (Thermo Fisher). Equal loading (50 mg) was verified using Ponceau red solution. Antibodies against TSLP (ab188766) was purchased from Abcam (MA, USA) and p-JAK1 (#3331S), JAK1 (#50994S), p-STAT1 (#9167S), STAT1 (#14994S), p-STAT3 (#52075S), STAT3 (#9139S) and anti-β-actin (#3700S) were obtained from Cell Signaling Technology (Danvers, MA, USA). After incubating with HRP-labeled goat anti-rabbit IgG (H+L) (1:3000; Beyotime, Shanghai, China), the Clarity Western ECl Substrate (BioRad, CA, USA) was conducted to proceed immunodetection and the Las-4000 Imaging System and Image MultiGauge software (Fujifilm, Tokyo, Japan) were used to reveal bands.
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6

Yersinia Protein Translocation Assay

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The experiment was performed essentially as described before (Nordfelth and Wolf-Watz, 2001 (link)). In short, 5 × 106 HeLa cells were infected with induced Yersinia strains at a MOI of 50:1 in the presence of Cytochalasin D (0.5 μg/ml). After infection the cells were washed in PBS and treated with 0.5 mg/ml Proteinase K (Roche Diagnostics, Gmbh) for 1 min. The cells were aspirated and incubated 20 min at room temperature, after which, 4 mM PMSF was added to inactivate remaining Proteinase K. The cells were lysed with 0.4% Digitonin in a total volume of 1 ml. Cell debris and bacteria were pelleted by centrifugation at 15,000 g, 10 min, 4°C. The supernatant was separated on a 12% SDS-PAGE and analyzed by Western blot using affinity purified antisera against YopE and YopH or monoclonal Tubulin antibody (Sigma Aldrich). The protein levels were quantified by use of the LAS4000 image reader and Multi Gauge-Image software (Fujifilm). The levels of YopE and YopH were normalized against Tubulin levels. The results were analyzed using the paired Student's t-test with the significance set at p ≤ 0.05*, p ≤ 0.01** and p ≤ 0.001***.
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7

Western Blot Analysis of Protein Samples

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Protein samples were prepared using a radioimmunoprecipitation assay lysis buffer.23 Samples were further heated and analyzed with SDS‐PAGE. After transferring and blocking, targeted proteins were detected with specific primary/secondary Abs and ECL reagents using GE Healthcare luminescence fluorescence image capture system (AI680). The MultiGauge image software (Fujifilm) was used for quantification. The PERK (sc‐32577) Ab was purchased from Santa Cruz Biotechnology. The p‐GCN2 (ab75836) and p‐PKR (phospho T446, ab32036) Abs were purchased from Abcam. Eukaryotic initiation factor 2α (AHO0802), p‐eIF2α (44‐728G), GFRAL (PA5‐24545), and α‐tubulin (A11126) Abs were obtained from Invitrogen. Antibodies against GCN2 (#65981), PKR (#12297), PERK (#5683), xCT (#12691), Akt (#4685), p‐Akt T308 (#2965), p‐Akt S473 (#9271), STAT3 (#9139), p‐STAT3 (#9145), ERK1/2 (#9101), and p‐ERK1/2 (#9102) were purchased from Cell Signaling Technology. Heme‐regulated eIF2α kinase Ab was purchased from MyBiosource (MBS2538144). Activating transcription factor 4 (10835‐1‐AP) Ab was obtained from Proteintech.
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8

Digital Autoradiography of 124I-H12(CAT)

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Digital autoradiography of 124I-H12(CAT) on the A431 xenograft was performed ex vivo following the whole body PET-CT analysis. Tumor sections were placed on a phospholuminescence plate for approximately ten minutes. The plate was scanned in a Bio-Imaging Analyser BAS-1800II (FujiFilm Medical Systems), and the digital images were processed using Multi Gauge Image software (FujiFilm Medical Systems).
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