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8 protocols using orca er

1

Cytosolic and Mitochondrial Ca2+ Measurement

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Transfected cells were loaded with 5 μM Fura-2-AM (340/380 nm) or 5 μM Fluo4-AM (488 nm) to measure cytosolic Ca2+ and 5 μM X-Rhod1 AM (562 nm) to measure mitochondrial Ca2+ levels, in HBSS (Sigma). Dyes were incubated for 20 min and washed three times prior experiments. For all the experiments with Thapsigargin HBSS was removed prior the beginning of the recordings and replaced with a Ca2+ free saline. Fluorescence measurements were obtained either using a cooled charge-coupled device (CCD) camera (Hamamatsu, Orca ER) or 710 Zeiss Confocal system.
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2

Fluorescence and Brightfield Imaging of Mitotic Exit

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For fluorescence imaging, cells were imaged in 8-well chamber slides (ibidi) in Leibovitz L-15 media with a heated 37°C chamber or in DMEM (no phenol red) with a heated 37°C chamber in 5% CO2. Images were taken every 4 minutes with either a 20x /0.4 NA air objective using a Zeiss Axio Observer 7 with a CMOS Orca flash 4.0 camera at 4x4 binning or a 40x/1.3 NA oil objective using a DV Elite system equipped with Photometrics CascadeII:1024 EMCCD camera at 4x4 binning. For brightfield imaging, cells were imaged in a 24-well plate in DMEM in a heated chamber (37°C and 5% CO2) with a 10x/0.5 NA objective using a Hamamatsu ORCA-ER camera at 2x2 binning on a Zeiss Axiovert 200M, controlled by Micro-manager software (open source: https://micro-manager.org/) or with a 20x/0.4 NA air objective using a Zeiss Axio Observer 7 as detailed above. Mitotic exit was defined by cells flattening down in the presence of nocodazole and MPS1 inhibitor. In assays where both recombinant BUBR1 and KNL1 are expressed in cells, cells were selected for quantification based on high levels of Turq2 as an indication of successful transient transfection of Turq2-BUBR1 constructs into cells stably expressing YFP-tagged KNL1 constructs.
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3

Visualizing GFP and RFP in Transgenic Animals

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GFP and RFP epifluorescence in transgenic animals was visualized either on a Leica DMRA2 compound microscope, where the images were captured by a Hamamatsu Orca-ER camera using the OPENLAB software, or on a Zeiss LSM 710 confocal microscope. Subsequent image analysis was performed using ImageJ and Photoshop CC.
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4

Immunolocalization of Ion Channels in Ovarian Follicles

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Follicles were fixed for 30 minutes at 4°C in 4% formaldehyde dissolved in PBS, washed in PBS and blocked for 1 hour at 20°C with 2% BSA/0,1% Triton X-100 in PBS. Thereafter, the follicles were incubated overnight at 4°C in PBS containing 0,5% BSA/0,1% Triton X-100 and the respective antiserum (Anti-ductin diluted 1:100, Anti-V-ATPase diluted 1:1000, Anti-Inx3 diluted 1:20, Anti-Cavα1 diluted 1:100, controls without antiserum).
After washing 6 times for 10 minutes, the follicles were either treated with goat-anti-rabbit-Cy3 (Jackson, USA; diluted 1:2000) or with donkey-anti-guinea-pig-FP488 (FluoProbes/Interchim, France; diluted 1:100) for 1 hour in PBS containing 0,5% BSA/0,1% Triton X-100. Washing was repeated 6 times and the nuclei were stained with 0,2 μg/ml DAPI (Sigma, Germany) in PBS for 3 minutes. Thereafter, the follicles were mounted in Fluoromount G (Interchim) and viewed, by using ×20 or ×40 objectives and the appropriate filter sets, either on a Zeiss Axiovert 200 wide-field fluorescence microscope (WFM), equipped with a Hamamatsu Orca ER camera, or on a Zeiss AxioImager.M2 structured-illumination microscope (SIM), equipped with a Zeiss ApoTome and a Zeiss AxioCamMRm camera.
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5

High-Resolution Imaging of Fluorescent Samples

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Each of the selected fields within a section was imaged by acquiring tiled low-power scans that captured each fluorescent channel and the corresponding darkfield illumination resulting in up to four images per section. Image acquisition used a motorized Zeiss AxioImager Z1 microscope (Carl Zeiss MicroImaging Inc.) equipped with a Hammamatsu Orca ER camera using Fluar 5× (numerical aperture 0.25) and Plan Apochromat 10× (numerical aperture 0.45) objectives. Both the image capture and tiling processes (using a 10% overlap between neighboring tiles) was controlled by Volocity software (version 6.1; PerkinElmer). Adobe Photoshop 2020 (Adobe Systems Inc.) was used postcapture to create composite images, including whole image contrast and/or brightness modifications where appropriate.
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6

Quantifying Pharynx Autofluorescence in L4 Nematodes

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L4 animals were picked and scored at appropriate times. Animals were placed on an agar pad containing a drop of 10 mm NaN3. Pictures were taken with a Hamamatsu ORCA‐ER digital camera on a Zeiss Axioplan microscope. The area directly behind the last bulb of the pharynx was photographed using Openlab 3.1.3 software (Improvision, Coventry, United Kingdom) with the same settings for all animals and conditions. The autofluorescence intensities were derived by selecting a defined area of the worm in the pictures and computing the ‘mean gray value’ by ImageJ software (NIH).
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7

Fluorescence Microscopy Imaging Techniques

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Imaging of fluorescently labeled cells was performed on a Zeiss 200M Axiovert microscope using a 100× (1.3 N.A) objective, a 40× objective for imaging of the rate of axon extension, and a 20× objective for acquisition of data addressing axon lengths in neurons expressing fluorescent constructs. Zeiss Axiovision software was used for image acquisition using an Orca ER (Hamamatsu) camera, and analysis using the built in functions for area, length and intensity measurements. All images used for quantification of fluorescence intensities were acquired using parameters that did not result in pixel saturation and maintained constant in any given experiment with all data acquired during the same microscopy session.
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8

Fluorescence Microscopy Cell Imaging

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Images were captured by a high performance CCD (Cooke SensiCam) camera on a Leitz DMRB fluorescence microscope or a high performance CCD Hamamatsu Orca-ER camera on a Zeiss AxioImager.Z1 fluorescence microscope. Slidebook image analysis software (Intelligent Image Innovations) was used to perform cell measurements and to analyse Z-stacks.
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