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3 protocols using hoil 1

1

Immunoblotting Analysis of Innate Immune Signaling

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Proteins were separated by SDS-PAGE or SDD-AGE and transferred to PVDF membrane, blocked with 5% non-fat dry milk in TBS containing 0.1% Tween 20. Membranes were incubated with the primary antibodies against: HOIL1 (Santa Cruz Biotechnologies, sc393754), HOIP (Abcam, ab46322), SHARPIN (Proteintech, 14626-I-AP), FLAG (M2, Sigma), MAVS (Cell Signaling Technologies (CST), 4983S), MDA5 (Adipogen, AL180), LGP2 (Proteintech, 11355–1-AP), IRF3 (CST, 11904S), IRF3-pS396 (CST, 29047S), cytochrome c (CST, 11940S), HA (CST, 3724S), V5 (CST, 13202S), ubiquitin (Santa Cruz Biotechnologies, sc-8017), M1-ubiquitin (Sigma-Aldrich, MABS451), β-actin (Sigma), GAPDH (CST, 97166S), followed by incubation with goat anti-rabbit or anti-mouse IgG-HRP. Blots were incubated with Immobilon Western Chemiluminescent HRP Substrate (Millipore) and imaged on a ChemiDoc Imaging System (Bio-Rad).
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2

Proteomics of Ferroptosis Regulators

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The following commercial antibodies and reagents were used in this study: GPx4 (Abcam ab125066 and Santa Cruz sc-166570), SHARPIN (Proteintech 14626-1-AP), HOIL-1 (Santa Cruz sc-365523), CYLD (Santa Cruz sc-74435), OTULIN (Cell Signaling Technology 14127), β-actin (TransGen Biotech HC201), SLC7A11 (Cell Signaling Technology 98051), FSP1 (Proteintech 20886-1-AP), SELN (Santa Cruz sc-365824), SELT (Abcam ab176192), Flag (Cell Signaling Technology 2368), HA (SAB T501), Myc (Sigma-Aldrich m4493), M1-Ub (EMD Millipore MABS451), K63-Ub (EMD Millipore 05-1308), K48-Ub (EMD Millipore 05-1307), Ub (Dako Z0458), His (TransGen Biotech HT501), Anti-Flag affinity gel (Sigma-Aldrich A2220), Anti-Myc affinity gel (Biotool B23402), Anti-HA affinity gel (Biotool B23302), Ni-NTA His-Bind Resin (EMD Millipore 70666-4), RSL3 (TargetMol T3646), Erastin (TargetMol T1765), CHX (MCE HY-12320), E64D (MCE HY-100229), PS-341 (MCE HY-10227), Fer-1 (MCE HY-100579), and Na2SeO3 (Sigma-Aldrich 214485).
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3

Immunoprecipitation and Kinase Assay

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Cells were washed with ice-cold PBS, lysed with TNT buffer and incubated for 30 min on ice.
Extracts were cleared by centrifugation at >10,000 g. Protein concentration was determined using the Micro BCA protein kit. Samples were precleared with Protein G Sepharose (Merck) for 30 min, and subsequently incubated with 1 g of antibody and Protein G Sepharose for a duration of 2h. Flag pull down was performed incubating cleared cell lysates with Anti-flag M2 affinity gel (Merck) during 2h. SHARPIN (A303-559A, Bethyl), HOIL-1 ((sc-393754, Santa Cruz Biotechnology) and linear ubiquitin, kindly provided by VM Dixit (Genentech), antibodies were used for IP. ERK1/2 kinase assay was performed from beads immunoprecipitated for HOIL-1. Beads were washed in kinase buffer (5 mM MOPS pH 7.2, 5 mM MgCl 2 , 1 mM EGTA, 0.4 mM EDTA, 0.05 mM DTT). Beads were subsequently incubated with kinase buffer, 2mM ATP, 350 ng/mL active untagged ERK1 (Merck), 350 ng/mL active ERK2-GST tagged (Merck) or 175 ng/mL ERK1 plus 175 ng/mL ERK2-GST for 30 min at 30°C.
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