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4 protocols using t bet pe

1

Evaluating T Cell Proliferation and Subsets

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Autologous T cells were co-cultured with matured DCs for 5 days at a 10:1 ratio, after being submitted to a staining protocol with carboxyfluorescein succinimidyl ester (CFSE). All co-cultures were carried out in U-bottomed 96-well plates in a final volume of 200 µL of RPMI medium. At the end of the co-culture period, cells were stained with fluorescence-conjugated antibodies, namely CD4-PerCP/Cy5.5 and CD8-APC antibodies (BioLegend) in order to evaluate the percentage of positive T cell proliferation. Type 1 T cells (Th1), type 2 T cells (Th2), and regulatory T cells (Treg) subsets were also evaluated through flow cytometry after the co-culture period with DCs for 5 days. The autologous T cells were stained using anti-CD4-PerCP/Cy5.5, anti-CD8-APC, anti-CD25-APC, anti-forkhead-box-P3 (FoxP3)-FITC, anti-GATA-binding protein 3 (GATA3)-FITC, and anti-T-box protein expressed in T cells (T-bet)-PE (Biolegend). As some markers are intracellular, the Cyto-Fast™ Fix/Perm Buffer Set (BioLegend), a fixation and cell permeabilization kit, was used for the intracellular staining, according to the manufacturer’s instructions. Data were analysed with GraphPad Prism version 8 (GraphPad Software, San Diego, CA, USA) and the results are presented as a percentage of positive cells (%) after subtraction of isotype control values.
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2

Comprehensive Cytokine and Lymphocyte Analysis

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Lymphocytes were all stained with the anti-mouse Abs CD4 PE-F594 (BD Biosciences, San Jose, CA), CD4 FITC (BioLegend, San Diego, CA), CD11b AF-700 (BioLegend), and GL3 (γδ TCR). All cytokine staining was performed using the BD Foxp3 intranuclear transcription factor staining kit for Foxp3 PE (eBioscience), T-bet PE (BioLegend), IL-17a Rat PE-Cy7 (BioLegend), IL-17a Alexa Fluor 488 (BD Biosciences), IFN-γ PerCP-Cy5.5 (BD Biosciences), IFN-γ allophycocyanin-Cy7 (BioLegend), IL-10 allophycocyanin (BioLegend), and IL-6 allophycocyanin (BioLegend) following the manufacturer’s instructions. For phenotypic analysis, flow cytometry was performed using a BD Biosciences LSR II flow cytometer, and analysis was performed using FlowJo (Tree Star, Ashland, OR).
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3

Comprehensive Cytokine and Lymphocyte Analysis

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Lymphocytes were all stained with the anti-mouse Abs CD4 PE-F594 (BD Biosciences, San Jose, CA), CD4 FITC (BioLegend, San Diego, CA), CD11b AF-700 (BioLegend), and GL3 (γδ TCR). All cytokine staining was performed using the BD Foxp3 intranuclear transcription factor staining kit for Foxp3 PE (eBioscience), T-bet PE (BioLegend), IL-17a Rat PE-Cy7 (BioLegend), IL-17a Alexa Fluor 488 (BD Biosciences), IFN-γ PerCP-Cy5.5 (BD Biosciences), IFN-γ allophycocyanin-Cy7 (BioLegend), IL-10 allophycocyanin (BioLegend), and IL-6 allophycocyanin (BioLegend) following the manufacturer’s instructions. For phenotypic analysis, flow cytometry was performed using a BD Biosciences LSR II flow cytometer, and analysis was performed using FlowJo (Tree Star, Ashland, OR).
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4

Multiparametric Immune Cell Profiling

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Cell staining was performed using fluorescence-conjugated antibodies, specifically CD1a-Alexa Fluor 488, CD14-PE, CD11c-APC, CD1c-FITC, CD16-APC, CD86-Alexa Fluor 488, CD83-PE, CD80-PerCP/Cy5.5, CD40-APC, human leucocyte antigen (HLA)-DR-Alexa Fluor 488, HLA-ABC-APC, CCR C-C chemokine receptor 1 (CCR1)-Alexa Fluor 488, CCR2-PerCP/Cy5.5, CCR5-APC, CCR7-PerCP/Cy5.5, chemokine receptor (CXCR4)-PE, CD3-PE, CD4-PerCP/Cy5.5, CD8-APC, CD69-FITC, CD25-APC, forkhead-box-P3 (FoxP3)-FITC, T-box protein expressed in T-cells (T-bet)-PE (all from Biolegend). Isotype-matched antibodies were used as controls. Briefly, 0.2 × 106 monocytes, DCs or T cells were washed and stained with 3 µl of fluorescence-conjugated antibodies in phosphate-buffered saline (PBS) + 1% FBS for 30 min at 4°C, in the dark. Cells were subsequently washed, resuspended in PBS + 1% FBS and analyzed in an Accuri C6 flow cytometer (BD Bioscience, San Jose, CA, USA). For intracellular staining, Fix&Perm (Thermo FisherScientific, Waltham, MA, USA), a fixation and cell permeabilization kit, was used as described by the manufacturer. Data were analyzed with FlowJo™ software (version 10) and results presented as percentage of positive cells or mean fluorescence intensity (MFI) after subtraction of isotype control values.
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