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12 protocols using hla dr pe

1

Characterization of Immune Cells via FACS

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In the case of blood samples, red blood cells were lysed with fluorescence activating cell sorter lysing solution. White blood cells were then washed and incubated with Fc block prior to staining with antibodies. The fluorescence-conjugated antibodies against CD14 (PerCP-Cy5.5) and human leukocyte antigen-DR (HLA-DR) (PE), both from eBioscience (eBioscience, San Diego, CA), were used for fluorescence activating cell sorter analysis. Cells were incubated with these antibodies for 20 min at 4°C in the dark, and then cell were washed and resuspended in 300 μL of PBS before applied to the BD LSR2 flow cytometer (BD Biosciences, San Jose, CA). The raw data were analyzed with the FlowJo software (FlowJo software Inc., Ashland, Ore).
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2

Neutrophil Identification by Flow Cytometry

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Circulating neutrophils were identified by flow cytometry using the protocol described in our previous publications [19 (link), 54 ]. In brief, 30 μl of fresh blood were incubated with fluorochrome-labelled antibody cocktail (CD19-FITC, CD16-Pacific Blue, CD11b-APC (all from BD Biosciences, Oxford, UK) and HLA-DR-PE (eBioscience, UK)) for 45 min in the dark at 4 °C. Red blood cells were removed with lysis buffer (BD Biosciences) and samples were acquired using a BD Canto II flow cytometer (BD Biosciences). The flow cytometry data were analysed using FlowJo (version 10, Tree Star Inc., Ashland, OR, USA). Neutrophils were identified based on their cell size (FSC) and granularity (SSC) as well as their cell surface antigens (CD11b+CD16+HLA-DR).
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3

Whole Blood Immunophenotyping by Flow Cytometry

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Freshly drawn blood samples (30 μl) were incubated with fluorochrome-labelled antibodies in a total volume of 100 μl FACS buffer (PBS/1% fetal calf serum (FCS)) for 45 min in the dark at 4 °C. Red blood cells were lysed by incubating the sample with 2 ml of 1X red blood cell lysis solution (BD Biosciences, Oxford, UK) for 10 min at room temperature (RT). After thorough washes samples were fixed in 1% paraformaldehyde (PFA) for 30 min in the dark at 4 °C. Samples were then washed and resuspended in PBS. All samples were examined by flow cytometry (FACS CANTO II; BD Biosciences), and data analysed blindly using the FlowJo software (version 10.07 for Windows, Tree Star, Ashland, OR, USA). The following anti-human antibodies were used for identification of leukocyte subsets: CD14-APC-Cy7, CD19-FITC, CD16-Pacific Blue, CD56-PE, CD8-PE-Cy7, CD4-Pacific Blue, CD11b-APC (all from BD Biosciences, UK) and HLA-DR-PE (eBioscience, UK). Live cells were gated for further analysis of leukocyte subsets. Different subsets of leukocytes were identified by relative cell size and granularity (FSC/SSC) or cell surface markers (Fig. 1). The neutrophil/lymphocyte ratio (NLR) was calculated by dividing the percentage of neutrophils by the percentage of lymphocytes.
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4

Multilineage Differentiation Potential of MSCs

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Cell media MCDB201, SMEM, DMEM, and RPMI 1640 were obtained from Life Technologies, human antibodies CD14-FITC, CD29-FITC, CD34-FITC, CD44-FITC, CD45-FITC, and CD90-FITC were from GeneTex, CD73-FITC and HLA-DR-PE were from eBioscience, mouse anti-human IgG1-FITC, IgG2a-FITC, and IgG2a-PE were from GeneTex, anti-CD3 and anti-CD28 were from BD Biosciences, Hoechst 33342, Lysotracker Green DND-265, and 6-carboxyfluorescein N-succinimidyl ester (CFSE) were from Invitrogen, Alizarin Red S, Alcian Blue, Oil Red O, phosphate-buffered saline (PBS), human serum albumin (HSA), erythrocyte lysis buffer, and all other chemicals were from Sigma-Aldrich and used without further purification.
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5

Phenotyping Immune Cell Surface Markers

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To study cell-surface markers, cells were collected using Versene, a non-enzymatic dissociation buffer (ThermoFisher). Cells were resuspended in the staining buffer (PBS with 4% fetal bovine serum and 2 mM ethylenediaminetetraacetic acid (EDTA)). Cells were then incubated in ice with Fc block reagent (Miltenyi Biotec) for 10 minutes, and stained with the viability dye LIVE/DEAD™ Fixable Violet (ThermoFisher), following the manufacturer's protocol.
Cells were then stained to study the proteins of interest, using the following antibodies: CD16 (APC) (#130-113-389, Miltenyi Biotec), CD14 (APC) (#130-110-520, Miltenyi Biotec), CD163 (FITC) (#33618, BioLegend), CD1a (PE) (#300106, BioLegend), CD80 (PE) (#H12208P, eBioScience), CD83 (APC) (#130-110-504, Miltenyi Biotec), CD86 (APC) (#130-113-569, Miltenyi Biotec), HLA-DR (PE) (#12-9956-42, eBioScience).
After staining, cells were fixed with PBS + 4% paraformaldehyde (Electron Microscopy Sciences) and analyzed within 2 days using a BD FACSCanto™ II Cell Analyzer (BD Biosciences). Data were analyzed with the FlowJo v10 software.
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6

Flow Cytometry Immunophenotyping of Blood

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Blood samples (30 µl) were incubated with fluorochrome-labelled antibodies in a total volume of 100 µl FACS buffer (PBS/1% fetal calf serum (FCS)) for 45min. Red blood cells were removed and samples fixed with lysis/fix solution (BD Biosciences, Oxford, UK). All samples were examined by flow cytometry (FACS CANTO II; BD Biosciences), and data analysed using the FlowJo software (Tree Star, Ashland, OR, USA). The following antibodies were used: CD14-APC-Cy7, CD16-Pacific Blue, CD62L-APC, MHC-II (HLA-DR, DP, DQ)-FITC (BD Biosciences), CCR2-PerCP, CX3CR1-PE-Cy7 (BioLegend UK Ltd., London, UK) and HLA-DR-PE (eBioscience, Hatfield, UK).
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7

Phenotypic Analysis of NP-MSCs

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NP-MSCs from patients’ IVDs were collected by trypsinization and resuspended at 1×106 cells/100 μl in PBS before immunophenotyping using flow cytometry analysis: Cells were incubated with fluorophore-conjugated monoclonal antibodies against CD45-PE, CD34-PE, HLA-DR-PE, CD73-PE, CD90-FITC and CD105-APC or isotype controls (all purchased from eBioscience, USA) at 25° C for 30 min in the dark as recommended by International Society for Cellular Therapy. The cells were washed twice with cold PBS and resuspended in 500 μl of PBS containing 1% paraformaldehyde before analysis by flow cytometry (Beckman, USA) according to standard procedures. The percentage of positive staining was calculated relative to that of the isotype control.
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8

Multicolor Flow Cytometry for MDSC Analysis

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Human monoclonal Abs against HLA-DR-PE (Cat no. 4310370, eBioscience), CD33-FITC (Cat no. 4296343, eBioscience), and CD11b-APC (Cat no. 4291932, eBioscience) conjugated with different fluorescent dyes were used for FCM analysis. Immunophenotyping of circulating or tumor-infiltrating MDSCs were classified as HLA-DR CD33+ CD11b+ cells via FCM staining using the multiplex gating strategy.
Human monoclonal Abs against Arg1-Alexa Fluor 488 (Cat no. 53369782, invitrogen) and iNOS (Cat no. MA517139, Invitrogen) were used for FCM analysis for Arg1 and iNOS expression in MDSCs. Samples were analyzed on a BECKMAN COULTER Navios FCM, and the data were analyzed using the Flowjo software.
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9

Characterization of NPMSCs by Flow Cytometry

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After trypsin (Biosharp, USA) digestion of NPMSCs, the cells were washed with phosphate-buffered saline (PBS, Sigma, USA) and centrifuged to generate a 100 μl cell suspension. CD105-PE, CD90-PE, CD73-PE, CD45-PE, CD34-PE, and HLA-DR-PE (eBioscience, USA) monoclonal antibodies were added to each tube. The samples were incubated in the dark for 30 min. After the cells were washed with PBS, they were resuspended in 400 μl of PBS, and then, flow cytometry (BD, USA) was used to detect the percentage of positive cells and the fluorescence intensity. An isotype control (eBioscience, USA) was used for each tube.
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10

Multiparameter Flow Cytometry of Immune Cells

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Blood samples (30 µl) were incubated with fluorochrome-labelled antibodies in a total volume of 100 µl FACS buffer (PBS/1% fetal calf serum (FCS)) for 45min. Red blood cells were removed and samples fixed with lysis/fix solution (BD Biosciences, Oxford, UK). All samples were examined by flow cytometry (FACS CANTO II; BD Biosciences), and data analysed using the FlowJo software (Tree Star, Ashland, OR, USA). The following antibodies were used: CD14-APC-Cy7, CD16-Pacific Blue, CD62L-APC, MHC-II (HLA-DR, DP, DQ)-FITC (BD Biosciences), CCR2-PerCP, CX3CR1-PE-Cy7 (BioLegend UK Ltd, London, UK) and HLA-DR-PE (eBioscience, Hatfield, UK).
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