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5 protocols using bx795

1

Mitochondrial Function Modulation Assay

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Carbonyl cyanidem-3-chlorophenylhydrazone (CCCP) was obtained from Calbiochem. Antimycin A was obtained from Sigma-Aldrich (ref. A8674). Oligomycin was obtained from MP Biomedicals, LLC (ref. 151786). Valinomycin was obtained from Thermo Fisher Scientific (ref. V1644). HeLa cells were treated with 10 μM Oligomycin and 4 μM Antimycin A, 10 μM Valinomycin or 10 μM CCCP. Pitstop 2 was obtained from Abcam and used at 20 μM. BX795 was obtained from Enzo Life Sciences, Inc. (ref. 189–0005) and used at 2 μM. BQU57 was obtained from Selleck Chemicals (ref. S7607) and used at 50 μM. DMSO was obtained from VWR (ref. 0231). 16% formaldehyde was obtained from Cell Signaling Technology (ref. 12606S).
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2

Inhibition of Cellular Kinases in Starfish Oocytes

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Wortmannin (LC Laboratories), pp242 (Cayman Chemical), BX795 (Enzo Life Sciences), and roscovitine (Merck) were dissolved in DMSO at 20 mM as a stock solution, and used at final concentrations of 40, 2, 6, and 30 µM, respectively. Rapamycin (FUJIFILM Wako Pure Chemical) was dissolved in DMSO at 20 mM as a stock solution. It was used at a final concentration of 20 µM, a concentration that was previously shown to be sufficient for TORC1 inhibition in starfish oocytes (Hiraoka et al., 2011 (link)).
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3

Inhibitor Preparation and Dosage

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Roscovitine (Calbiochem), wortmannin (LC Laboratories), and BX795 (Enzo Life Sciences) were dissolved in DMSO at concentrations of 50, 20, and 6 mM, respectively, as stock solutions and used at final concentrations of 45, 40, and 6 µM, respectively.
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TBK1-Mediated Tau Phosphorylation Assay

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In vitro kinase assays were performed by incubating 0.5 μg active TBK1 (SignalChem, T02-10G-10) with 1 μg tau (441 residues) purified recombinant proteins (SignalChem, T08-55BN-20) in kinase assay buffer (25 mM MOPS, pH 7.2, 12.5 mM β-glycerol-phosphate, 25 mM MgCl2, 5 mM EGTA, 2 mM EDTA and 0.25 mM dithiothreitol (DTT)) plus 100 μM ATP for 30 min at 37 °C (SignalChem, K01-09). TBK1 was expressed form Baculovirus expression vector in Sf9 insect cells and purified in an active form. The specific activity of TBK1 has been determined to be 290 nmol/min/mg. TBK1 kinase assay was quenched by adding 2 M urea for MS analysis. For both time course in vitro kinase assay and TBK1 inhibitor dose–response reactions, 400 ng of purified tau and 200 ng of active TBK1 were used and reactions were quenched by boiling at 98 °C in Laemmli sample buffer (BioRad, 161-0737) for 5 min prior to western blot analysis. For TBK1 inhibition, increasing concentrations (5, 10, 20, and 40 μM) of BX795 (Enzo Life Sciences, ENZ-CHM189-0005) (53 (link), 78 (link)) were added to in vitro reactions. After boiling, a fraction (100 ng) of protein was used for western blot analysis.
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5

HEK-293 Cell Transient Transfection and TBK1 Inhibition

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Human embryonic kidney (HEK)-293 cells (ATCC, CRL-3216) were cultured in Dulbecco’s modified Eagle’s medium (Gibco, 11965-092) supplemented with 10% (v/v) fetal bovine serum (Gibco, 97068-091) and penicillin/streptomycin (Gibco, 15140-122) and maintained at 37 °C under a humidified atmosphere of 5% (v/v) CO2. For transient transfection, cells grown to 80–90% confluency were transfected with expression plasmids using JetPrime reagent (Polyplus, 114-07) according to the manufacturer’s instructions. A TBK1 inhibitor BX795 (Enzo Life Sciences, ENZ-CHM189-0005) was added at the reported concentrations 24 h post transfection and further incubated for 6 h. Subsequently, cells were rinsed with cold 1× phosphate buffered saline (PBS) and harvested in NP-40 lysis buffer (25 mM Tris-HCl (pH 7.5), 150 mM NaCl, 1 mM EDTA, 1% NP-40, 5% glycerol, plus HALT protease inhibitor cocktail, (ThermoFisher, 87786)).
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