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14 protocols using ab3191

1

Western Blot Analysis of Protein Levels

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The total protein was extracted from the BC cells by using a commercial RIPA lysis buffer, and the following Western Blot analysis was conducted to examine the protein levels of the involved genes, and all the detailed experimental procedures had been well documented in the previous work [32 (link), 33 (link)]. The primary antibodies were listed as follows: Cyclin D1 (1:1500, #ab134175, Abcam, UK), CDK2 (1:2000, #ab235941, Abcam, UK), Bax (1:2000, #ab3191, Abcam, UK), β-actin (1:3000, #ab3191, Abcam, UK), LC3B (1:1000, #ab221794, Abcam, UK), p62 (1:1000, #ab225618, Abcam, UK), ULK1 (1:2000, #2707773, Millipore, USA), p-ULK1 (757) (1:2000, #2571270, Millipore, USA), p-ULK1 (555) (1:1500, #ab229537, Abcam, UK), AMPK (1:1500, #2532S, Cell Signaling Technology, USA) and p-AMPK (1:2000, #2535S, Cell Signaling Technology, USA).
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2

Cardiac Muscle Protein Expression Analysis

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Cardiac muscle tissue was harvested and placed in RIPA lysis buffer containing 1 mM phenylmethanesulfonyl fluoride. Protein samples were separated using 10% and 15% SDS-PAGE and transferred to polyvinylidene difluoride membranes (Biotech Well). The membranes were blocked with 5% BSA in TBST for 2 h and incubated overnight at 4 °C with the following primary antibodies: anti-ALKBH5 (ab195377, Abcam), anti-Mettl3 (ab195352, Abcam), anti-Mettl14 (ab252562, Abcam), anti-FTO (ab280081, Abcam), anti-BAX (ab3191, Abcam), anti-BCL-2 (ab196495, Abcam), anti-cleaved caspase3 (ab214430, Abcam), anti-Raf1 (A0223, Abclone), anti-phospho-Raf1-S259 (AP1012, Abclone), anti-p44/42 ERK1/2 (4370S, CST), anti-FLAG (Abcam, ab1162), anti-Rasal3 (NBP2-83439, Novusbio), and anti-β-actin (4970S, CST). The samples were then incubated at room temperature (24 °C) for 1.5 h with horseradish peroxidase-conjugated secondary antibody. Proteins were detected using Immobilon Western Chemiluminescent HRP Substrate (Millipore, Billerica, MA, USA) and gel images were captured using ImageQuant LAS 4000 Mini Biomolecular Imager (GE Healthcare, Barrington, IL, USA).
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3

Salivary Gland Protein Expression Analysis

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Salivary gland tissues were homogenized in cold radioimmunoprecipitation assay lysis (RIPA) buffer, which was mixed with a protease inhibitor cocktail and phenylmethylsulfonyl fluoride (PMSF). Samples were incubated at room temperature for 30 min, and centrifuged at 12,000 rpm for 15 min at 4 °C. Then The supernatant was collected and boiled at 100 °C for 10 min.
We used 10% SDS PAGE gels to separate equal amounts of proteins, and transferred the proteins using polyvinylidene difluoride membranes. Membranes were blocked with 10% skim milk for 2 h at room temperature. The membranes were then incubated with primary antibodies against NADPH oxidase 4 (NOX4; 1:2000 dilution; 14347-1-AP; Proteintech), Bax (1:5000 dilution; ab3191; Abcam), Bcl-2 (1:1000 dilution; ab182858; Abcam), caspase 3 (1:2000 dilution; ab184787; Abcam), Phospho-p53 (1:2000 dilution; P04637; CST, MA, USA), and GAPDH (1:10,000 dilution; HRP-60004; Proteintech). All blots were detected using ECL chemiluminescence reagents and analyzed using the Image Lab software.
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4

Protein Expression Analysis of DJ-1, Apoptosis, and Cell Cycle Regulators

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Cells and clinical samples were lysed in RIPA buffer, and quantified by Rapid Gold BCA (Thermo, USA). Protein samples were separated equally by SDS-PAGE and electrotransferred to polyvinylidene difluoride (PVDF) membranes, which were then blocked for 1 h, and incubated with anti-DJ-1 (ab76008, Abcam, USA), anti-Bax (ab3191, Abcam, USA), anti-Bcl2 (ab196495, Abcam, USA), Anti-Cleaved Caspase-3(ab214430, Abcam, USA), Anti-CDK4(ab95255, Abcam, USA), Anti-Cyclin D1 (ab226977, Abcam, USA), Anti-E2F1 (ab137415, Abcam, USA), Anti-Cyclin D2 (ab230883, Abcam, USA), Anti-Cyclin D3 (ab112034, Abcam, USA), Anti-RB(17218-1-AP, proteintech, USA), Anti-pRb (phospho S780, ab47763,Abcam, USA), Anti-E2F1(12171-1-AP, proteintech, USA), Anti-H2A(16441-1-AP, proteintech, USA), Anti-α-Tubulin(11224-1-AP, proteintech, USA), Anti-Flag(80010-1-RR, proteintech, USA), and Anti-α-Actin(23660-1-AP, proteintech, USA). Next, the membranes were incubated in corresponding secondary antibodies for 1 h. Proteins were visualized and detected by SuperSignal West Atto(A38554, Thermo, USA).
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5

Protein Expression Analysis in HepG2 Cells

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Lysis buffer (200 μl/well) was used to lyse HepG2 cells. Lysis buffer was composed of
Triton X-100 (1%), Tris (50 mM, pH=7.6) and NaCl (150 mM), with inhibitors of phosphatases
and proteases. sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE, 7.5%)
was used to separate 40 μg of the total extracted protein. Then Western blotting was done
as demonstrated by Moeschel et al. (10 (link)). Following the application of antibodies for
western blotting anti-PRDX1 (ab109498), anti-beta actin (ab115777), anti
caspase-3 (ab13847 and ab32042), anti-cleave caspase-9 (ab202068 and ab25758), anti-PARP-1
(ab191217), anti-Bim (ab7888), antiFis1 (ab189846), anti-APaf-1 (ab254248), anticytochrome
c (ab133504), anti-Bcl-2 (ab182858), anti-Bax (ab3191), anti-DRP1 (ab184247) and antiDyn2
(ab65556; all purchased from AbCam, UK). Nitrocellulose was blocked using skimmed milk
(5%) or BSA (2%, both from Merck, Germany) for two hours. Subsequently, membranes were
incubated with primary antibodies at 4°C overnight. Before incubation with secondary
antibody, washing was performed (four times for 10 minutes), followed by appropriate
conjugated secondary incubation for one hour. For visualizing expression level of
proteins, enhanced chemiluminescence was performed.
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6

Western Blot Analysis of Autophagy Markers

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About 50 μg protein was loaded on Any kDa™ Mini-PROTEAN® TGX™ Precast protein gels and transferred to low-autofluorescence polyvinylidene fluoride (PVDF) membranes (Bio-Rad, Hercules, CA, USA). For autophagy Western blots, cells were treated with a 100 nM Bafilomycin A1 (B1793; Sigma-Aldrich St. Louis, MO, USA) 4 h before collection to accumulate LC3B in the cytoplasm. Primary antibodies were γH2A.X (1:1,000; ab11174; Abcam, Cambridge, UK), cyclin-dependent kinase 2 (Cdc2) (1:1,000; 28439S; Cell Signaling Technology, Danvers, MA, USA), cyclin B1 (1:1,000; 4138S; Cell Signaling Technology, Danvers, MA, USA), p21 (1:1,000; ab188224; Abcam, Cambridge, UK), Bax (1:1,000; ab3191; Abcam, Cambridge, UK), Bcl-2 (1:1,000; ab16904; Abcam, Cambridge, UK), caspase 3 (1:1,000; ab188224; Abcam, Cambridge, UK), SQSTM1/p62 (1:1,000; ab56416; Abcam, Cambridge, UK), LC3B (1:1,000; PM036; MBL International Corp., Woburn, MA, USA), and β-actin (1:10,000; A1978; Sigma-Aldrich St. Louis, MO, USA). Immunoblots were detected with 1:10,000 goat-anti-mouse DyLight™ 680 conjugated or donkey-anti-rabbit DyLight™ 800 conjugated using an Odyssey CLx Near-Infrared Fluorescence Imaging System (LI-COR Biosciences, Lincoln, NE, USA).
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7

Protein Expression Analysis Using Western Blotting

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The harvested cells after the different treatments were lysed in RIPA buffer (Beyotime Biotechnology) containing 10 µM PMSF on ice for 20 min. After centrifugation at 4 °C for 14,000 g × 10 min, the supernatant was transferred into a new sterile tube. Subsequently, protein concentrations were determined using a BCA Protein Assay Kit (Thermo Fisher Scientific). A total of 20 µg protein was separated by SDS-PAGE and transferred onto PVDF membranes (Millipore, Burlington, USA). After blocking with 5% non-fat milk, the membranes were incubated with the individual primary antibodies Rabbit anti-USP33 (ab237510, Abcam, MA, USA), rabbit anti-GAPDH (ab9485, Abcam), mouse anti-Bax (ab3191, Abcam), rabbit anti-Bcl-2 (ab182858, Abcam), rabbit anti-JAK2 (ab108596, Abcam), rabbit anti-STAT3 (ab68153, Abcam) and rabbit-STAT3 (phospho Y705) (ab267373, Abcam) at 4 °C overnight. After three washes by 1 × PBST, the membranes were incubated with HRP- conjugated rabbit anti-Goat IgG (31,403, Thermo Fisher Scientific) or Donkey anti-Mouse IgG (H + L) (A16011, Thermo Fisher Scientific) for 1 h at room temperature. Subsequently, the membranes were visualized by Pierce™ ECL Western Blotting Substrate (Thermo Fisher Scientific, MA, USA). The membranes were imaged by Image J software.
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8

Western Blot Analysis of Apoptotic Markers

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The expression of cleaved caspase-3, cleaved caspase-9, Bax and Bcl-2 in the cultured chondrocytes was detected by western blot analysis. The cultured C28/I2 cells were harvested and lysed with RIPA buffer (Beyotime Institute of Biotechnology, Inc.). The protein concentration of the samples was then determined using a BCA kit (Beyotime Institute of Biotechnology, Inc.). The proteins were then separated by 10% SDS-PAGE and transferred to a PVDF membrane. The membrane was blocked with 5% non-fat milk, and the proteins were probed with the necessary primary antibodies [cleaved caspase-3 (ab2302, 1:1,000; AbcamA), cleaved caspase-9 (ab2324, 1:1,000; Abcam), Bax (ab3191, 1:1,000; Abcam), Bcl-2 (ab117115, 1:2,000; Abcam)] and a secondary antibody [goat anti-rabbit IgG-HRP (ab97051, 1:1,000; Abcam)]. The membranes were then subjected to luminescence with an ECL kit (P0018FS; Beyotime Institute of Biotechnology, Inc.) and exposure with the Chemiluminescent gel imaging system (Tanon-5200; Tanon Science & Technology Co., Ltd.). Images were collected for analysis.
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9

Quantifying Apoptosis Markers in VSMCs

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VSMCs from each group were collected and lysed on ice using lysis buffer (Solarbio, Beijing, China). The mixture was centrifuged at 12,000 rpm at 4°C for 15 minutes. After discarding the supernatant, the protein concentration was determined using a BCA kit (Merck, Kenilworth, NJ, USA). Equal amounts of protein were used for sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). The separated proteins were transferred onto a polyvinylidene difluoride (PVDF) membrane, which was then blocked with 5% skimmed milk at 25°C. The membrane was then incubated at 4°C overnight with the following primary antibodies, which were all purchased from Abcam: anti-Bax (ab3191, 1 : 2000), anti-Bcl-2 (ab196495, 1 : 1000), anti-vascular cell adhesion molecule 1 (VCAM-1; ab174279, 1 : 2000), anti- intercellular cell adhesion molecule-1 (ICAM-1; ab109361, 1 : 2000), anti-E-selectin (ab137732, 1 : 2000), anti-GBP-1 (ab22604, 1 : 2000), and anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (ab8245, 1 : 5000). The next day, the membrane was rinsed and incubated with the secondary antibody at 37°C for 30 minutes. Enhanced chemiluminescence (ECL) reagent (Thermo Fisher Scientific) was used to visualize the protein bands and GAPDH was used to normalize the protein levels.
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10

Protein Extraction and Western Blot Analysis

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T24 and 5637 cells were treated with RIPA reagents (Beyotime), and then the total protein was obtained by centrifugation (12,000 × rpm, 10 min). The protein was quantified with BCA protein assay kit (beyotime). 50 μg protein/lane was isolated in 10% SDS-PAGE, and then transferred to PVDF membrane. The membranes were sealed for 2 h at room temperature with 5% skimmed milk, and then incubated with primary antibody [xCT (1:1000, ab175186, Abcam); GPX4 (1:1000, ab40993, Abcam); Bcl-2 (1:1000, ab117115, Abcam); Bax (1:1000, ab3191, Abcam); Cytochrome C (1:1000, ab13354, Abcam); PI3K (1:1000, #4292, Cell Signaling Technology); p-PI3K p85α (1:1000, #17,366, Cell Signaling Technology); AKT (1:1000, #9272, Cell Signaling Technology); p-AKT Thr308 (1:1000, #13,038, Cell Signaling Technology); p-AKT Ser473 (1:1000, #4060, Cell Signaling Technology); mTOR (1:1000, #2972, Cell Signaling Technology); p-mTOR Ser2448 (1:1000, #5536, Cell Signaling Technology); β-actin (1:1000, ab8224, Abcam)] overnight at 4°C. Then the membranes were incubated for 2 h at room temperature with second antibody [Goat Anti-Rabbit IgG H&L (1:5000, ab96899, Abcam) or Goat Anti-Mouse IgG H&L (1:5000, ab96879, Abcam)]. The bands were visualized with chemiluminescent reagents (Beyotime) and photographed on a gel image analysis system (Bio-Rad, USA).
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