The largest database of trusted experimental protocols

34 protocols using stat5

1

Western Blot Antibody Characterization Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blot antibodies were obtained from Cell Signaling Technology unless specified otherwise: MEF2C (catalog 5030), Cleaved NOTCH1 Val1744 (catalog 4147), MAML1 (catalog 11959), STAT5 (catalog 94205), phospho-STAT5 Tyr694 (catalog 9351), HA-tag (catalog 3724), DDK-tag (catalog 2368), HDAC4 (catalog 15164), phospho–HDAC4 Ser246/HDAC5 Ser259/HDAC7 Ser155 (catalog 3443), BCL2 (Santa Cruz Biotechnology Inc., sc-130308), LAMIN B (Santa Cruz Biotechnology Inc., sc-6216), β-actin (Abcam, ab6276), phospho-Ser222 MEF2C (PhosphoSolutions, p1208-222), and SIK3 (Sigma-Aldrich, HPA048161).
+ Open protocol
+ Expand
2

Protein expression analysis by Western blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blots were generated by the semi-dry method. Proteins obtained from cell line lysates using SIGMAFast protease inhibitor cocktail (Sigma) were transferred onto nitrocellulose membranes (Bio-Rad, München, Germany) and blocked with 5% dry milk powder dissolved in phosphate-buffered-saline buffer (PBS). The following antibodies were used: alpha-Tubulin (Sigma), AUTS2 (Origene), SMAD1 (Santa Cruz Biotechnology, Heidelberg, Germany), STAT5 (Santa Cruz Biotechnology), phospho-STAT5 (Cell Signaling Technology, Danvers, MA, USA). For loading control the blots were reversibly stained with Poinceau (Sigma) and then detection of alpha-Tubulin (TUBA) or SMAD1 was performed. Secondary antibodies were linked to peroxidase for detection by Western-Lightning-ECL (Perkin Elmer, Waltham, MA, USA). Documentation was performed using the digital system ChemoStar Imager (INTAS, Göttingen, Germany).
+ Open protocol
+ Expand
3

Klebsiella pneumoniae Infection Model

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tobacco was purchased from Henan Tobacco Industry (Hongqi Canal® Filter tip cigarette; tobacco type, tar: 10 mg; nicotine content: 1.0 mg; carbon monoxide: 12 mg, Zhengzhou, China). Klebsiella pneumoniae (strain ID: 46114) was obtained from the National Center for Medical Culture Collection (CMCC, Beijing, China). Aminophylline was purchased from Shandong Xinhua Pharmaceutical Co., LTD. (Shandong, China). KW6002 was obtained from MedChem Express (Shanghai, China). Anti-CD4, IL-17A, CD25, and Foxp3 antibodies were obtained from eBioscience, Inc. (Affymetrix, CA, USA). Rat IL-1β, tumor necrosis factor (TNF)-α, IL-6, IL-17A, and IL-10, ELISA kits were purchased from Boster Biological Engineering (Wuhan, China). TGF-β, IL-6, and anti-CD3/CD28 antibodies were obtained from BD Biosciences (Franklin Lakes, USA). The mouse CD4+ CD62L+ T Cell Isolation Kit was obtained from Miltenyi Biotec Inc. (Miltenyi, CA, USA). Anti-A2aR, Foxp3, RORγ, p-STAT3 (Tyr705), p-STAT5 (Tyr694), STAT3, and STAT5 antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). HiScript QRTSuperMix and AceQ quantitative polymerase chain reaction (qPCR) SYBR Green Master Mix were purchased from Vazyme Biotech (Nanjing, China).
+ Open protocol
+ Expand
4

Western Blot Analysis of STAT Phosphorylation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein lysates were prepared using lysis buffer (50 mM Tris, pH 8.0, 250 mM NaCl, 0.5% NP-40) containing protease and phosphatase inhibitors. Nuclear and cytoplasmic fractionation was performed according to the manufacturer’s protocol (Active Motif, Carlsbad, CA). Protein lysates were resolved by 8% SDS-PAGE and immunoblotted with primary antibodies specific for pSTAT5, pSTAT3, pSTAT1 and poly(ADP-ribose) polymerase (PARP) (Cell Signaling, Boston, MA); STAT5, STAT3 and STAT1 (Santa Cruz Biotechnology, Santa Cruz, CA); and actin or tubulin (Sigma-Aldrich). Band intensity was quantitated using Image J software (NIH).
+ Open protocol
+ Expand
5

Western Blot Analysis of Signaling Pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were then lysed at the indicated time points in a lysis buffer containing protease inhibitors, and the resultant cell lysates were separated by SDS-PAGE under reducing conditions and transferred to polyvinylidene difluoride membrane (Merck Millipore). The membrane was blocked, probed with antibodies against p19 (R&D Systems), EBI3 (Santa Cruz), CD5L (D-11 from Santa Cruz, GeneTex), STAT1 (Transduction Laboratories), STAT3 (Santa Cruz), STAT5 (Santa Cruz), AKT (Cell Signaling), ERK (Cell Signaling), pY-STAT1 (Cell Signaling), pY-STAT3 (Cell Signaling), pY-STAT5 (Cell Signaling), pAKT (Cell Signaling), pERK (Cell Signaling), or actin (Sigma-Aldrich), followed by an appropriate secondary antibody conjugated to horseradish peroxidase and visualized with an enhanced chemiluminescence detection system (GE Healthcare) per the manufacturer’s instructions. Immunoreactive bands were detected with a ChemiDoc XRS (Bio-Rad). To detect phosphorylation, naive CD4+ T cells (5 × 105 cells/ml) were stimulated with plate-bound anti-CD3 (2 μg/ml) and anti-CD28 (1 μg/ml) under Th conditions for 3 days. The resultant cells were washed, rested in 10% FBS medium for 6 h and stimulated with various molecules for the indicated times, followed by western blotting with anti-pY-STATs, anti-pAKT and anti-pERK, and subsequently with antibodies against their total molecules.
+ Open protocol
+ Expand
6

Signaling Pathway Protein Detection

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were exposed to inhibitors or DMSO for 4 hours, washed in ice-cold PBS and lysed in presence of Protease Arrest (EMD) and Phosphatase Inhibitor (Calbiochem). Total protein was quantified by Bradford assay (Bio-Rad), separated on 4% to 12% Bis-Tris gels (Invitrogen) and blots probed for pJAK2, JAK2, STAT3, pSTAT3, pSTAT5, pMEK1/2, MEK, pERK1/2, ERK, Actin (Cell Signaling), STAT5 (Santa Cruz), and AXL (R&D). Densitometry of band intensities was with Image-Studio (LI-COR).
+ Open protocol
+ Expand
7

Comprehensive Protein Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein analysis was performed via Western blot on tissue and cell homogenates in passive lysis buffer (Promega), separated by SDS-PAGE, transferred to PVDF membrane (Whatman) and blotted for CGL (ab151769 Abcam), CBS (ab135626 Abcam), 3MST (HPA001240 Sigma), Stat5 (sc-835 Santa Cruz), p-Stat5 (#9359 Cell Signaling Technology), GNMT (Aviva), AHCY (Abcam ab56146), ATF4 (aka CREB-2 C-20, Santa Cruz Biotechnology sc-200), ATG5 (Novus, NB110–53818), ATG7 (Sigma, A2856), β-Tubulin 9F3 (#2128 Cell Signaling) or Actin (#4970 Cell Signaling) followed by HRP conjugated secondary anti-rabbit antibody (Dako).
+ Open protocol
+ Expand
8

Western Blot Analysis of Signaling Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were lysed in SDS Lysis buffer (12 mM Tris-Cl, pH 6.8, 5% glycerol, and 0.4% SDS), and the protein concentrations were measured with the SMART BCA Protein Assay kit (iNtRON Biotechnology, Korea). The proteins were resolved with SDS-polyacrylamide gel electrophoresis followed by transfer to PVDF membranes (Millipore, Billerica, MA, USA) and incubated overnight with the appropriate antibodies. The antibodies used were as follows: phospho-STAT5 (p-STAT5; rabbit polyclonal IgG; #9351, 1:1,000), cyclin D1 (rabbit polyclonal IgG; #2922, 1:1,000), and PARP (rabbit polyclonal IgG; #9542, 1:1,000) from Cell Signaling Technology (Danver, MA, USA), STAT5 (rabbit polyclonal IgG; #sc-835, 1:1,000) from Santa Cruz (Santa Cruz, CA, USA), and β-actin (mouse monoclonal IgG; # A5441, 1:5000) from Sigma-Aldrich. Goat anti-rabbit IgG (#111-035-003; 1;5,000) and anti-mouse IgG (#115-035-033; 1:5,000) secondary antibodies were obtained from Jackson ImmunoResearch Laboratories, Inc. (West Grove, PA, USA).
+ Open protocol
+ Expand
9

Evaluating STAT3/5 Phosphorylation

Check if the same lab product or an alternative is used in the 5 most similar protocols
The institutional review board of Memorial Sloan Kettering Cancer Center approved sample collection and experiments. Informed consent was obtained from all patients providing material for studies. Peripheral blood mononuclear cells were freshly extracted using Ficoll separation and treated ex vivo with increasing concentrations of CHZ868 or DMSO for 16 hr. 50-60 μg protein of whole cell lysate was separated on 4-12% Bis-Tris electrophoresis gels and blots were probed for pSTAT3, STAT3, pSTAT5 and Actin (CST) and STAT5 (Santa Cruz).
+ Open protocol
+ Expand
10

Immunoblot Analysis of Protein Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
An equal number of cells were collected and subjected to immunoblot analysis to determine protein expression levels of Bcl-6 (BD Biosciences, 561520, dilution 1:500), Blimp-1 (Genscript, A01647, dilution 1:500), STAT5 (Santa Cruz, sc-835, dilution 1:5,000), phospho-STAT5 (pY694, BD Biosciences, 611964, dilution 1:5,000) and V5-tagged proteins (Invitrogen, R960-25, dilution 1:5,000). In brief, separation of lysates by SDS–polyacrylamide gel electrophoresis was followed by immunoblot analysis. GAPDH (Santa Cruz, sc-25778, dilution 1:2,500) or β-actin (Genscript, A00730, dilution 1:10,000) expression was monitored to ensure equal protein loading. Additional information for antibodies can be found in Supplementary Table 3 and uncropped versions of all immunoblots are provided in Supplementary Fig. 5.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!