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Sds page electrophoresis

Manufactured by Thermo Fisher Scientific
Sourced in United States, China

SDS-PAGE electrophoresis is a laboratory technique used to separate and analyze proteins based on their molecular weight. It utilizes an electric current to move protein samples through a gel matrix, allowing the proteins to be separated and visualized.

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12 protocols using sds page electrophoresis

1

Rabbit Model for Bone Mineralization

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Twenty-four New Zealand rabbits were purchased from Changchun yisi laboratory animal technology company (Changchun, China). The rabbits were 8–9 weeks of age and were adaptively fed for 2 weeks under SPF level environment, 23 ± 2°C, humidity 50%. The operating protocols for rats were completely obeyed the regulations of the Ethics Committee of Harbin Medical University. Pentobarbital sodium, DLX5 protein, and alizarin calcium staining kit were purchased from sigma (USA); ethylenediam ine tetraacetic acid (EDTA), PBS, FBS, and DMEM were purchased from Gibco (Shanghai, China), DLX5, ALPL, IBSP, and ENPP1 rat anti-rabbit primary antibodies were purchased from Nanjing Jiancheng Bioengineering Institute (Nanjing, China). Mic-CT and SDS-PAGE electrophoresis were purchased from Thermo Fisher (USA).
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2

Western Blot Analysis of Inflammasome Proteins

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Cells and culture supernatants, and tissue homogenates were incubated with cell lysis buffer (20 mM Tris HCl (pH 7.4), 200 mM NaCl, 1% Nonidet P-40) and denatured in Laemlli buffer by boiling for 10 min. Proteins were separated by SDS-PAGE electrophoresis (Thermo Scientific) after which proteins were transferred to nitrocellulose membranes (Thermo Scientific) using semi-dry (20 min) or turbo (7 min) blotting. Blocking and antibody incubation were performed in PBS or TBS supplemented with 0.05% Tween20 (vol/vol) and 3% or 5% (wt/vol) non-fat dry milk. The membranes were incubated overnight at 4°C with primary antibodies against Caspase-1 (1:1000; Adipogen), IL-1β (1:2000; GeneTex), Nlrp3 (1:1000; Adipogen), Caspase-11 (1:1000; Novus biologicals), GSDMD (1:1000)[29 (link)], ASC (1:1000; ECM Biosciences), MLKL (1:1000; Millipore), or Caspase-3 (1:1000; Cell signaling). After washing, membranes were incubated with HRP-conjugated anti-mouse, anti-rabbit or anti-rat secondary antibodies (1:5000; Jackson ImmunoResearch Laboratories, 111-035-144, 112-035-143, 112-035-143) or were incubated with the directly labeled primary antibody β-actin-HRP (1:10000; Santa Cruz) for up to 3 h. Proteins of interest were detected by the enhanced SuperSignal West Pico Chemiluminescent Substrate (Thermo Scientific).
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3

Age-Related Neuroinflammation in Rats

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Aged SD rats were purchased from Junke Animal Technology Company (Nanchang, China). The rats were 40 weeks of age and were adaptively fed for 2 weeks under an SPF level environment, 25°±2°C, with humidity of 50%. All the procedures for rats were agreed upon with the Ethics Committee of Fujian Maternity and Child Health Hospital, Affiliated Hospital of Fujian Medical University on August 3, 2018. Institutional Animal Care and Use Committee (IACUC) approval number 180086. CCL11 protein, Enzyme-Linked Immunosorbent Assay (ELISA) kit were purchased from sigma (USA); 3% isoflurane and PBS were purchased from Gibco (Shanghai, China); SDS-PAGE electrophoresis was purchased from Thermo Fisher (USA); Rabbit anti-rat primary antibody NADPH Oxidase 1 (NOX1) and Signal Transducer and Activator of Transcription 3 (STAT3) were purchased from innochem; Morris water maze was purchased from Nolds Ethovisin 3.0 (Netherlands). Human CCL11 protein (10474-H07E-50, 50 μg) was purchased from Innochem. CXCL10 (D5L5L) Rabbit (14969S, 100 μL, CST) was purchased from Innochem.
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4

Immunoblotting Analysis of Apoptosis Markers

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Cells and culture supernatants, or whole colon homogenates, were incubated with cell lysis buffer (20 mM Tris HCl (pH 7.4), 200 mM NaCl, 1% Nonidet P-40), and denatured in Laemlli buffer by boiling for 10 min. Proteins were separated by SDS-PAGE electrophoresis (Thermo Scientific) after which proteins were transferred to membranes using turbo (7 min) blotting. Blocking and antibody incubation were performed in PBS supplemented with 0.05% Tween20 (vol/vol) and 3% non-fat dry milk. The membranes were incubated overnight at 4˚ C with primary antibodies against caspase-1 (1:1000; Adipogen, AG-20B-0042-C100), IL-1β (1:2000; GeneTex, GTX74034), GSDMD (1:1000, Abcam, ab209845), anti-cCasp3 Asp175 (1:1000, Cell Signaling, 9661S), caspase-3 (1:1000, Cell signaling, 9662S), cleaved-caspase-8 (Asp387) (D5B2) (1:1000, 8592S, Cell signaling), MLKL (1:1000, Sigma-Aldrich, MABC604) or pMLKL (Ser345) (D6E3G) (1:1000, Cell signaling, 37333). After washing, membranes were incubated with HRP-conjugated anti-mouse, anti-rabbit or anti-rat antibodies (1:5000; Jackson ImmunoResearch Laboratories, 115-035-146, 111-035-144 and 112-035-143) or were incubated with the directly labeled primary antibody β-actin-HRP (1:10000; Santa Cruz) for up to 3 h. Proteins of interest were detected by the enhanced SuperSignal West Pico Chemiluminescent Substrate (Thermo Scientific).
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5

Mitochondrial Protein Analysis by Western Blot

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Western blotting was performed as we described previously [17 (link),19 (link),30 (link)]. Briefly, cells were lysed and lung tissue was homogenized. Mitochondrial fraction was prepared using subcellular fractionation kit (G-Biosciences, St. Louis, MO, USA) per manufacturer's instructions. Protein samples were separated by SDS-PAGE electrophoresis (Thermo-Fisher) and transferred to nitrocellulose membranes. We used the following antibodies: DRP1, TOM20, mtTFA, MFN1, MFN2, POLγ, TDP1, DJ-1 (all from Santa Cruz Biotechnology), TOP1-cc (Millipore), p-DRP1 (Ser616) (Cell Signaling Technology, Danvers, MA, USA), GAPDH (Abcam, Cambridge, MA, USA) and β-actin (Sigma, St. Louis, MO, USA). We used horseradish peroxidase (HRP)-conjugated AffiniPure donkey anti-rabbit immunoglobulin (Ig) G or anti-mouse IgG purchased from Jackson ImmunoResearch (West Grove, PA, USA). The blots were developed using an enhanced chemiluminesence kit for Western blotting (Millipore) according to the manufacturer's instructions. Images were quantitated using NIH Image J software.
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6

SDS-PAGE and Western Blot Analysis of PARP-1

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Forty micrograms of protein per lane, prepared as in the above section, was resolved by 4-12% SDS-PAGE Electrophoresis (Invitrogen) before being transferred to polyvinylidenedifluoride (PVDF) membranes (Bio-Rad). The membranes were blocked for 1 h with 5% skim milk at room temperature and then incubated with a mouse monoclonal poly (ADPribose) polymerase-1 (PARP-1) antibody (1:500 dilution; Santa Cruz biotechnology, Inc.) and with a β-actin antibody (1:4,000 dilution; Santa Cruz biotechnology, Inc.) overnight at 4°C. β-actin was probed as the loading control. The membranes were washed 3 times and then incubated with a secondary antibody (1:4,000 dilutions; Santa Cruz biotechnology, Inc.) at room temperature for 1 h. Goat anti-mouse secondary antibody was used for PARP and β-actin primary antibody. The membranes were washed 4 times and developed by an enhanced chemiluminescence system according to the manufacturer's instructions (Thermo scientific).
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7

Protein Extraction and Analysis Workflow

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Tissue samples were lysed by a radio-immunoprecipitation assay (RIPA) buffer. A bicinchoninic acid assay (Invitrogen, CA) was used to determine the protein concentration in the tumors according to the manufacturer’s protocols. ELISA assay was performed according to the manufacturer’s protocols after appropriate titration. For western blot analysis, the protein solution was diluted by sample buffer (4×) containing reducing reagent and heated at 95 °C for 5 min. Protein was separated by 4–12% SDS-PAGE electrophoresis (Invitrogen), and then transferred to polyvinylidene difluoride membranes (Bio-Rad). The membranes were blocked with 3% bovine serum albumin at room temperature for 1 h and then incubated with primary antibodies overnight at 4 °C. The membranes were washed and further incubated with a secondary antibody (appropriate diluted) at room temperature for 1 h, and then detected using the Pierce ECL Western Blotting Substrate (ThermoFisher Scientific, IL). GAPDH was used as the control.
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8

Protein Expression Analysis in H460 Tumors

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Example 5

H460 tumor-bearing mice were given IV injections every second day and mice were sacrificed 24 hours after the third injection. Protein per lane was separated by 4%-12% SDS-PAGE electrophoresis (Invitrogen) before being transferred to polyvinylidene difluoride (PVDF) membranes (Bio-Rad). The membranes were blocked for 1 h with 5% non fat dry milk (Bio-Rad) at room temperature and then incubated with antibodies overnight at 4° C. The membranes were washed 3 times and then incubated with a secondary antibody (1:4,000 dilution; Cell signal Inc.) at room temperature for 1 h. Finally, the membranes were washed 4 times and developed using an enhanced chemiluminescence system according to the manufacturer's instructions (Thermo scientific).

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9

Western Blot Analysis of Protein Expression

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SRBC tumor samples, UMUC3 cells or NIH3T3 cells were lysed with a Radio-Immunoprecipitation Assay (RIPA) buffer supplemented with 1% protease inhibitor cocktail (PIC). Protein concentration in the tumor or cell lysate was determined using bicinchoninic acid (BCA) protein assay reagent according to the manufacturer’s instruction (Invitrogen). After dissolved, diluted, reduced and separated by 4–12% SDS-PAGE electrophoresis (Invitrogen), the proteins were then transferred to polyvinylidene difluoride (PVDF) membranes (Bio-Rad). Membranes were blocked with 5% bovine serum albumin (BSA). Then the target proteins were probed with primary antibodies (1:500 dilution), followed by the horseradish peroxidase-conjugated secondary antibodies (1:4,000) respectively, and detected using the Pierce ECL Western Blotting Substrate (Thermo Fisher Scientific, Rockford, IL). The relative protein expression level was quantified with Image J software (National Institutes of Health, Bethesda, MD) using GAPDH as a loading control.
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10

Protein Extraction and Western Blot Analysis

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Tissue samples were lysed with a Radio‐Immunoprecipitation Assay buffer and the extracted protein were quantified by BCA assay (Invitrogen, CA) following the manufacturer's protocols. The protein solution was mixed with 4 × buffer containing reducing reagent and heated at 95 °C for 5 min. Then, protein samples were separated by 4–12% SDS‐PAGE electrophoresis (Invitrogen), after which they were transferred to polyvinylidene difluoride (PVDF) membranes (Bio‐Rad). PVDF membranes containing proteins were blocked with 3–5% bovine serum albumin at room temperature for 1 h and then incubated with primary antibodies at 4 °C overnight. GAPDH was used as a control. After being washed and incubated with secondary antibodies, PVDF membranes were detected using ECL western blotting substrate (Thermo Fisher Scientific, IL).
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