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10 protocols using anti icam 1

1

Quantification of NMV Internalization in HCAEC

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In order to quantify NMV internalisation, HCAEC (5 × 104) were seeded onto 24-well tissue culture plates and cultured overnight. The next day HCAEC were incubated with media alone, media + TNF (1 ng mL−1; R&D Systems, Abingdon, UK), media + anti-ICAM-1 (100 ng mL−1; Biolegend, London, UK, catalogue number: 322704) or media + TNF + anti-ICAM-1 for 4 h. Consequently fluorescently labelled NMVs (0.4 × 103 µL−1) were added and cells incubated for 2 h at 4 °C, room temperature or 37 °C (as specified in the corresponding figure legends). The use of low temperatures to inhibit endocytosis has been used by others to demonstrate internalisation is a metabolically active process i.e. endocytosis dependent59 (link),60 (link). Cells were then washed to remove excess NMVs and detached using a trypsin/EDTA solution. Cells were washed and, immediately prior to flow cytometry analysis, Trypan blue (1 mg mL−1) was added to each sample in order quench fluorescence of residual surface bound NMVs61 (link),62 (link), thus ensuring any fluorescent signal detected was from internalised NMVs only. Data were analysed for mean fluorescence intensity using an LSRII flow cytometer using FACSDiva acquisition software.
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2

Modulating ICAM-1 and CD44 in PBMCs

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Human PBMCs were seeded in 96-well plates and pre-treated with 1 and 10 μM of KRO-105714. After incubating for 30 min, these cells were treated with 10 μM SPC and/or 5 μg/ml PHA. PBMCs were analyzed by flow cytometry using 1 μg/ml of anti-CD45-APC (BioLegend, San Diego, CA, USA), anti-ICAM-1 (BioLegend) and anti-CD44 antibodies in phosphate-buffered saline (PBS) plus 1% fetal bovine serum (FBS) on ice for 10 min. Cells were then washed and analysed. Staining data were collected using a FACSCanto II Cytometer (BD Biosciences). To set the gates for defining positive and negative cells at 5000 cells in multicolor staining, samples were stained with a mixture of all antibodies [50 (link)].
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3

Endothelial Cell Surface Protein Expression

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Endothelial cells (ECs) were collected by trypsinization and incubated with PE-conjugated anti-E-selectin, anti-ICAM-1, anti-VCAM-1, or an isotype antibody (Biolegend, San Diego, CA) in PBS containing 1.0% BSA for 30 min at 4 °C. ECs were then washed with PBS and surface expression of E-selectin, ICAM-1, and VCAM-1 was determined by FACS analysis. Alternatively, ICAM-1 and VCAM-1 in ECs were determined by immunoblot analyses using anti-ICAM-1 and anti-VCAM-1 (Abcam, Cambridge, MA), respectively.
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4

Comprehensive Neutrophil Phenotyping and Signaling

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Harvested cells were stained with antibodies including: anti-Ly6G (1:200 dilution; BioLegend, no. 127606, 127610, or 127618), anti-CD11b (1:200 dilution; BioLegend, no. 101206), anti-CD11a (1:200 dilution; BioLegend, no. 153103), anti-SIRPα (1:200 dilution; BioLegend, no. 37210), anti-CD62L (1:200 dilution; BioLegend, no. 104428), anti-PD-L1 (1:200 dilution; BioLegend, no. 124312), anti-CXCR2 (1:300 dilution; BioLegend, no. 149604), anti-ICAM1 (1:300 dilution; BioLegend, no. 116121), anti-CD29 antibodies (1:300 dilution; BioLegend, no. 102221). In some analysis mentioned in the results, cells were treated with a fixation kit (BD Biosciences), subsequently stained with anti-STAT1 (1:100 dilution; Cell Signaling, no. 80916S), anti-p-STAT1 (Tyr701) (1:100 dilution; Cell Signaling, no. 8009S), anti-p-Src (Tyr416) (1:20 dilution; ThermoFisher, no. MA5-28055), or anti-Fyn (1:50 dilution; Santa Cruz, no. sc-434 FITC). Surface phenotype, transcription factor and intracellular protein levels of Ly6G+ neutrophils were analyzed using FACSCanto II (BD Biosciences). Neutrophil viability was assessed by staining and flow analysis with the annexin V/PI kit (1:4,000 dilution; Thermo Fisher Scientific, no. P3566) as described previously74 (link).
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5

Immunofluorescence Imaging of ICAM-1 and SM22

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Cells were fixed with 4% (w/v) paraformaldehyde and washed. Subsequently, cells were permeabilized with 0.1% [v/v] Triton™ X-100 and blocked with PBS containing 1% (w/v) BSA and 5% (v/v) normal goat serum. After washing, cells were incubated with anti-ICAM-1 (BioLegend) and anti-SM22 (ab14106, Abcam) antibodies at 4 °C overnight. After washing, cells were stained with Alexa Fluor® 488- and Alexa Fluor® 546-conjugated secondary antibodies (Molecular Probes) and Alexa Fluor® 647-conjugated cholera toxin B subunit for GM1 detection, and then counterstained with DAPI. Immunofluorescence images were acquired using a confocal laser scanning microscope. For the quantification of SM22-positive cells, the numbers of SM22-positive cells with red color and the total numbers of cells stained with DAPI from four fields were counted and then the percentage of SM22-positive cells was calculated.
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6

Comprehensive B Cell Immunophenotyping

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For analysis of B cells from blood, cultures or nasal tissue, cell samples were simultaneously Fc-blocked with unlabeled mouse IgG (Lampire) and ICAM-1-blocked with anti-ICAM-1, (BioLegend), which was fluorescently-labeled or not, depending upon the experiment. After 30 minutes at 4°C, B cells were stained with fluorescently tagged virus (Alexa Fluor 488-RV-A39 and Alexa Fluor 568-RV-A16), viability dye Live/Dead Aqua (ThermoFisher), and various combinations of the following fluorescent antibodies depending on the sample type and application: anti-CD3 (BioLegend), anti-CD11c (BioLegend), anti-CD19 (BioLegend), anti-CD20 (BioLegend), anti-CD27 (ThermoFisher), anti-CD38 (Becton Dickinson), anti-CCR5 (ThermoFisher), anti-CXCR3 (BioLegend), anti-CXCR5 (BioLegend), anti-IgD (ThermoFisher), anti-IgM (BioLegend), anti-IgG (BD Biosciences), anti-IgA (Miltenyi), and anti-IgE (BioLegend). After incubating for 30 minutes at 4°C, cells were then fixed and permeabilized (FoxP3 fix/perm kit, ThermoFisher), before staining for intracellular IgM (BioLegend), IgG (Becton Dickinson), IgA (Miltenyi), IgE (BioLegend), Ki-67 (BioLegend), and T-bet (BioLegend). Cells were analyzed on an LSR Fortessa Cytometer (Becton Dickinson) using FlowJo version 10.5.3 (TreeStar). (See Table S1).
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7

Comprehensive B Cell Immunophenotyping

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For analysis of B cells from blood, cultures or nasal tissue, cell samples were simultaneously Fc-blocked with unlabeled mouse IgG (Lampire) and ICAM-1-blocked with anti-ICAM-1, (BioLegend), which was fluorescently-labeled or not, depending upon the experiment. After 30 minutes at 4°C, B cells were stained with fluorescently tagged virus (Alexa Fluor 488-RV-A39 and Alexa Fluor 568-RV-A16), viability dye Live/Dead Aqua (ThermoFisher), and various combinations of the following fluorescent antibodies depending on the sample type and application: anti-CD3 (BioLegend), anti-CD11c (BioLegend), anti-CD19 (BioLegend), anti-CD20 (BioLegend), anti-CD27 (ThermoFisher), anti-CD38 (Becton Dickinson), anti-CCR5 (ThermoFisher), anti-CXCR3 (BioLegend), anti-CXCR5 (BioLegend), anti-IgD (ThermoFisher), anti-IgM (BioLegend), anti-IgG (BD Biosciences), anti-IgA (Miltenyi), and anti-IgE (BioLegend). After incubating for 30 minutes at 4°C, cells were then fixed and permeabilized (FoxP3 fix/perm kit, ThermoFisher), before staining for intracellular IgM (BioLegend), IgG (Becton Dickinson), IgA (Miltenyi), IgE (BioLegend), Ki-67 (BioLegend), and T-bet (BioLegend). Cells were analyzed on an LSR Fortessa Cytometer (Becton Dickinson) using FlowJo version 10.5.3 (TreeStar). (See Table S1).
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8

Aortic Valve and Artery Morphology Analysis

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For morphological analysis, sections of aortic valves or brachiocephalic arteries were stained with hematoxylin and eosin (H&E) or Masson’s trichrome stain. Immunofluorescence staining was performed by incubation with rabbit anti-CD45 (Abcam,1:100), anti-ICAM-1 (Biolegend, 1:100), anti-PDGFRb (Santa Cruz, 1:50) followed by FITC-anti-rabbit or rat IgG. FITC-anti-SMA antibody (Sigma) staining was used for tdTomato tracing immunofluorescent assays. Details of antibodies can be found in the Major Resources Table. In situ RNAscope assays for Pdgfrb, Sca1, KLF4, and Spry1 were performed according to RNAscope fluorescent multiplex assay instructions (ACDBio). Images were captured using Canon EOS camera and remote imaging software (Canon), or a Leica SP8 confocal microscope. Quantification was performed using ImageJ.
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9

Cytokine-Induced Endothelial Activation

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Cells were stimulated with 100 ng/mL IL-6 (Peprotech) and sIL-6Rα (Peprotech) overnight. Cells were detached with 1 mM EDTA solution, stained with anti-ICAM-1 (Biolegend), and anti-VCAM-1 (Biolegend) antibodies, fixed with 4% paraformaldehyde and analysed using a FACS Canto II device (BD Bioscience).
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10

Cordycepin Modulation of DC Activation

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Mouse BMDCs, human MoDCs or RAW264.7 macrophages were plated at a density of 1 × 10 6 cells per milliliter in complete RPMI 1640 medium. Then, 0.1 μg/ml lipopolysaccharide (LPS) (Sigma, MO, USA) with or without the indicated concentration of cordycepin (Sigma, USA) were added, and the cells were subsequently incubated for 18 h at 37°C in a 5% CO 2 atmosphere. The cells were incubated with 0.1 μg/ml LPS as a stimulator. After the incubation, the cells were harvested, and uorescence-labeled mouse/human anti-CD11c, anti-CD40, anti-CD86, anti-mouse I-A b (MHC II), anti-CCR7 (BD Bioscience, CA, USA), anti-integrin b1, anti-integrin a4, anti-LFA-1, anti-c type lectin and anti-ICAM-1 (Biolegend, CA, USA) monoclonal antibodies were used to stain DC surface markers. The expression of these markers was analyzed using a FACSVerse instrument (BD Bioscience, CA, USA). The supernatants from cells cultured for 18 h were isolated and assayed for mouse/human IL-6, TNF-α and IL-12 levels using ELISA kits (BD Bioscience, CA, USA) according to the manufacturer's protocol.
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