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11 protocols using anti p p70s6k thr389

1

Quantifying mTOR and TGF-β Signaling

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Fresh heart tissues from mice were harvested and lysed using RIPA lysing buffer (Beyotime, Shanghai, China) to extract total protein. The primary antibodies were listed as follows: anti-GAPDH, anti-mTOR, anti-phosphorylated-mTOR (Ser2448) (p-mTOR), anti-p70S6K, anti-p-p70S6K (Thr389), anti-4EBP1, anti-p-4EBP1(Ser65), anti-Smad2, anti-p-Smad2 (Ser465/467), anti-Smad3, and anti-p-Smad3 (Ser423/425) (Cell Signaling Technology, USA); anti-TGF-β1 (Santa Cruz Biotechnology, USA); and anti-collagen I (Abcam, UK). Signals were detected using the FluorChem E data system (Cell Biosciences, USA) and then quantified using Quantity One 4.52 (Bio-Rad, USA).
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2

Cilostazol Modulates SIRT1 and AMPK Signaling

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Cilostazol [OPC-13013, 6-[4-(1-cyclohexyl-1H-tetrazol-5-yl) butoxy]-3,4-dihydro-2-(1H)-quinolinone] was donated by Otsuka Pharmaceutical Co., Ltd. (Tokushima, Japan), dissolved in 1% NH4OH to prepare a 10 mM stock solution, and diluted in DMSO (vehicle, <0.1% v/v of final volume). AICAR (5-aminoimidazole-4-carboxamide-1-β-D-ribofuranoside, an AMPK activator), resveratrol, and Compound C were from Sigma-Aldrich. Sirtinol (Calbiochem) was dissolved in DMSO. Aβ1–42 peptide was purchased from AnaSpec (AnaSpec, Fremont, CA). Anti-SIRT1 antibody from Santa Cruz Biotechnology Inc. (Santa Cruz, CA) and anti-CTFβ antibody from Calbiochem (La Jolla C). Anti-AMPKα, anti-P-AMPKα (Thr 172), anti-acetyl-CoA carboxylase (ACC), anti-P-ACC (Ser 79), anti-LKB1, anti-P-LKB1 (Ser 428), anti-P70S6K, anti-P-P70S6K (Thr 389), anti- p62/SQSTM1, anti-mTOR, anti-P-mTOR and anti-LC3A/B antibodies were purchased from Cell Signaling Technology (Danvers, MA).
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3

Immunoblotting and Immunohistochemistry Techniques

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The relevant procedures have been described in a previous report [8 (link)]. Proteins were reacted with one of the following: anti-LC3A (#4599), anti-LC3B (#3868), anti-PARP (#5625), anti-GADD153 (#2895), anti-GRP78 (#3177), anti-t-Akt (#9272), anti-p-Akt Ser473 (#9271), anti-p-ERK (#4370), anti-p-p70S6K Thr389 (#9234) purchased from Cell Signaling (Danvers, MA), anti-p62 (GTX100685) obtained from GeneTex (Irvine, CA) or monoclonal anti-β-actin (Sigma, AC-40). Immunohistochemistry (IHC) was carried out with polyclonal anti P-gp, followed by anti-goat IgG (Santa Cruz Biotechnology) conjugated to horseradish peroxidase. Hematoxylin was used for counterstaining.
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4

Evaluating Phosphoproteomic Signaling in Cholangiocarcinoma

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Cholangiocellular carcinoma cells were cultured in serum-free DMEM. Supernatant of OSI-027 treated cells was collected. Equal amounts of protein (4 µg of supernatant, 20 µg of lysate) were applied on 10% SDS-polyacrylamide gels and electrophoresed (BioRad, Munich, Germany) as described before (Guenzle et al., 2017 (link)). Blots were incubated with primary antibodies anti-MMP2 (#4022 1:1000 Cell Signaling Technology), anti-AKT (#9272 1:1000 Cell Signaling Technology), anti-pAKTSer473 (#9271 1:1000 Cell Signaling Technology), anti-ERK1/2 (#4696 1:1000 Cell Signaling Technology), anti-pERKThr202/Tyr204 1/2 (#4370 1:1000 Cell Signaling Technology), anti-p38 (#8690 1:1000 Cell Signaling Technology), anti-p-p38Thr180/Tyr182 (#4511 1:1000 Cell Signaling Technology), anti-4EBP1Ser65 (#9451 1:1000 Cell Signaling Technology), anti-p-p70S6KThr389 (#9206 1:1000 Cell Signaling Technology), anti-pSTAT3Tyr705 (#9145 1:1000 Cell Signaling Technology), anti-PDI (sc-74551 1:1000 Santa Cruz). Proteins were visualized by enhanced chemiluminescence (BioRad, Munich, Germany). PDI was used as loading control for the whole cell lysate. Finally, densitometry of the presented western blot was performed using ImageJ. Ratio was calculated to pixel/area of reference PDI. Expression of phosphorylated protein was calculated in relation to total protein amount.
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5

Western Blot Analysis of Autophagy Markers

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Total protein from cell death and autophagy assays was analyzed by western blot as previously described [25 (link)]. The following antibodies were used: Anti-LC3A/B (1:1000), anti-SQSTM1/p62 (1:1000), anti-p-p70S6K (Thr389) (1:1000), anti-p-4EBP1 (1:1000), anti-p-mTOR (Ser2448) (1:1000), α-tubulin (1:2000), and β-actin (1:2000), all purchased from Cell Signaling (Danvers, MA, USA). β-actin and α-tubulin were used as a loading control. HRP-conjugated goat anti-mouse and goat anti-rabbit (all from Cell Signaling) were used as secondary antibodies. Chemiluminescence using ECL (GE Healthcare Life Sciences) was detected on an Image Quant LAS4000 mini photo documentation system (GE Healthcare Life Sciences). The subsequent quantification was performed by Image J software version 1.52s (National Institutes of Health—https://imagej.nih.gov/ij/).
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6

Western Blot Analysis of Protein Targets

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The relevant procedures have been described in a previous report.20 (link) Proteins were reacted with one of the following: The anti-TG2 antibody (Clones CUB 7402+TG100) purchased from Thermo Fisher Scientific Inc. The anti-cleaved-PARP (#5625), anti-GRP78 (#3177), anti-t-Akt (#9272), anti-p-Akt Ser473 (#9271), anti-p-ERK (#4370), anti-p-p70S6K Thr389 (#9234), anti-p21 anti-Total H3, and anti-acetyl H3 purchased from Cell Signaling (Danvers, MA, USA). Anti-β-actin (AC-40) obtained from Sigma-Aldrich Co. The anti-P53 antibody purchased from Dako (Glostrup, Denmark). Anti-mouse immunoglobulin G purchased from Calbiochem (San Diego, CA, USA). Anti-SOD2 (Santa Cruz Biotechnology, sc-18503).
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7

Western Blot Analysis of Protein Signaling

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Total proteins from tissues were separated by SDS-PAGE, blotted and probed with anti-Akt (Cell Signaling, Danvers, MA, USA), anti-phospho-Akt (ser473; Cell Signaling), anti-β-actin antibody (Santa Cruz, CA, USA), anti-Lin28a (Abcam, Cambridge, MA, USA), anti-p70S6k (Cell Signaling), anti-p-p70S6k (Thr389, Cell Signaling), anti-Cleaved Caspase-3(Sigma-Aldrich), anti-Caspase-3 (Sigma-Aldrich), anti-Bcl-2 (Sigma-Aldrich), anti-Bax (Sigma-Aldrich). The Bradford assay (Bio-Rad Laboratories, Hercules, CA, USA) was used to quantify protein concentrations. The blots were visualized with a chemiluminescence system (Amersham Bioscience, Buchinghamshire, UK). The signals were quantified by densitometry.
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8

Immunochemical and Immunohistochemical Analysis of Protein Signaling

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All reagents were from Sigma (St Louis, MO, USA) unless otherwise indicated.
For immunochemical analysis, antibodies against Vav1 (sc‐132), Akt1 (sc‐1618), Akt2 (sc‐5270), Akt3 (sc‐11520), p‐Akt1/2/3 (sc‐14032), Bcl‐2 (sc‐509), Caspase‐3 (sc‐371), and IkBα (sc‐7148) were from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Anti‐p‐Akt1 (Ser473) (#4060), anti‐p‐Akt2 (Ser474) (#8599), anti‐p‐P70S6K (Thr389) (#9205), and anti‐P70S6K (#9202) were from Cell Signaling Technology (Danvers, MA, USA). Anti‐Bax (#610983) was from BD Biosciences (Milan, Italy), anti‐Cyclin D1 (#04‐1151) was from Merck Millipore (Milan, Italy), and anti‐β‐Tubulin (#T4026) was from Sigma.
For immunohistochemical analysis, the anti‐Vav1 (sc‐132) and the anti‐Akt1 (sc‐377457) antibodies were from Santa Cruz Biotechnology, anti‐p‐Akt (Ser473) (#3787) antibody was from Cell Signaling Technology, and the anti‐Cyclin D1 (MCP511) antibody was from YLEM (Rome, Italy).
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9

Investigating the mTOR Signaling Pathway

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PBS buffer, Dulbecco’s modified Eagle’s medium (DMEM), and fetal bovine serum, as well as anti-mTOR, anti-Akt, anti-p70S6K, anti-p-mTOR (Ser 2448), anti-p-Akt (Ser473), and anti-p-p70S6K (Thr389) antibodies were obtained from Cell Signaling Technology (MA, USA). Dimethyl sulfoxide (DMSO), protease inhibitor cocktail, and rabbit anti-human β-actin antibodies were obtained from Sigma (St. Louis, MO, USA). PCR kit, Trizol, and first-strand cDNA synthesis kit were purchased from TAKARA Company (Dalian, China). Polyvinylidene difluoride (PVDF) membranes and goat anti-rabbit and horseradish peroxidase-conjugated IgG were obtained from Millipore (MA, USA). TRIzol reagent and sodium dodecyl sulfate polyacrylamide electrophoresis (SDS-PAGE) gels were acquired from Beyotime Biotechnology (Haimen, China).
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10

Western Blotting Analysis of Signaling Pathways

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The following primary antibodies were used for the western blotting: anti‐p70S6K (#9202; Cell Signaling Technology), anti‐p‐p70S6K (Thr389, #9205; Cell Signaling Technology), anti‐rpS6 (#2217; Cell Signaling Technology), anti‐p‐S6 (Ser240/244, #5364P; Cell Signaling Technology), anti‐eIF4E‐binding protein 1 (4EBP1) (#9452; Cell Signaling Technology), anti‐p‐4EBP1 (Thr37/46, #2855S; Cell Signaling Technology), anti‐extracellular signal‐regulated kinase 1/2 (ERK1/2) (#9102; Cell Signaling Technology), anti‐p‐ERK1/2 (Thr202/Tyr204, #9101; Cell Signaling Technology), anti‐p38 MAPK (p38) (#9212; Cell Signaling Technology), and anti‐p‐p38 (Thr180/Tyr182, #9211; Cell Signaling Technology).
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