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9 protocols using ace2 his

1

Spike Protein Binding Assay

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The ACE2-Fc were serially diluted 4-fold starting from 40 μg/mL. Each dilution was mixed with different concentrations of LRRC15-His (0, 1,250, 5,000, and 20,000 ng/mL). These sample series were transferred to the plate that coated with spike glycoprotein from SARS-CoV-2, Wuhan-Hu-1 with C-terminal histidine (BEI Resources, NR-53947) at 4°C, overnight. After 2-h incubation, the wells were treated with goat antihuman IgG Fc secondary antibody, HRP at a 1:3,000 dilution for 1 h at room temperature. Chromogenic development was generated with TMB substrate and quenched with stop solution. Optical density was measured in a BioTek synergy HT microplate reader.
For spike protein competition, ACE2-His (Sino Biological, #10108-H08H) was diluted to 300 ng/mL, 30 ng/mL, 3 ng/mL. The ACE2-His was added to the plate with serially diluted LRRC15-Fc, allowing ACE2-His to compete with LRRC15-Fc binding to spike protein (BEI Resources, NR-53947) immobilized on the plate. After 2-h incubation, the plate was then washed, incubated with goat antihuman IgG Fc secondary antibody and the signal detected as described above.
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2

Quantifying RBD-ACE2 Binding Kinetics

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The results of the mix-and-read RBD/ACE2 interaction assay were corroborated by BLI. Samples comprised of a 1.4:1 molar ratio of mAbs (10 µg/mL) to mouse Fc-RBD (2.5 µg/mL, Sino Biological, 51.5 kDa) were complexed in kinetics buffer for 30 min at room temperature. The experiment was carried out at 30 °C with agitation at 1000 rpm on an Octet Red 96 or an Octet KQe (Forte Bio). His2 biosensors were hydrated for 10 min in kinetics buffer, then loaded for 300 s with 2.5 µg/mL ACE2-His (residues 1–740) (Sino Biological) or truncated ACE2 (described above for the mix-and-read assay) in kinetics buffer. Pre-complexed samples were then associated for 300 s followed by dissociation in kinetics buffer for 300 s. Binding responses of mouse Fc-RBD to ACE2-His were measured with and without mAb present and were analyzed with Octet Data Analysis v. 9.0.
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3

SARS-CoV-2 Recombinant Protein Study

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The following commercially available antibodies were used in this study: rabbit; the anti-SARS-CoV-2 spike protein mAb (Sino Biological, Wayne, PA, USA #40150-R007, RRID: AB_2827979); and HRP-conjugated goat anti-rabbit IgG (H+L) polyclonal antibody (Jackson ImmunoResearch, West Grove, PA, USA #111-035-045, RRID: AB_2337938).
The following human recombinant proteins were obtained from Sino Biological, Wayne, PA, USA (Table 1): ACE2-His (#10108-H08H), DPP4-His (#10688-H08H), FGFR3-His (#16044-H08H), and the SARS-CoV-2 S1-His spike protein (40591-V08H). All recombinant proteins used in this study were resuspended to a stock concentration of 250 µg/mL in ddH2O, according to the manufacturer’s instructions.
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4

Phage-based ELISA Assay for ACE2-RBD Binding

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RBD-Fc (0.2 μg/well) was coated in a microplate in 100 μL of coating buffer (pH 9.6) at 4 °C overnight. Then, 100 μL/well 2% BSA-PBST was incubated for 1.5 h for blocking. After washing 3 times, a serial phage solution was added and incubated with RBD-Fc for 1 h. Anti-M13/HRP conjugate (diluted 1/10,000 in 2% BSA/PBS dilution) and TMB were used to amplify the signals and to develop color, respectively. After stopping the reaction via 1.0 M HCl, the absorbance was measured at 450 nm. After that, the sub-saturation (80% of maximal effect) concentration of the phage solution was used for competitive ELISA.
RBD-Fc (0.2 μg/well) was coated for competitive phage ELISA. After blocking for 1.5 h and washing 3 times, the sub-saturation concentration of VHH-phage solutions was mixed with 4 μg/mL ACE2-His (SinoBiological). The mixture of phage and ACE2-His was added to wells coated with RBD-Fc and incubated for 1 h, and the following steps were as described previously.
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5

Measuring ACE2-RBD Protein Interactions

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A competition
assay was performed to confirm that the AlphaLISA assay was sensitive
the ACE2-His-Avi interactions with RBD-Fc. ACE2-His (Sino Biological,
Wayne, PA) and S1-His (Sino Biological, Wayne, PA) are not recognized
by either the streptavidin donor bead nor the protein A acceptor bead.
A gradient of ACE2-His concentrations (1 μM to 0.01 nM) were
mixed with RBD-Fc (4 nM). After 30 min of preincubation at 25 °C
ACE2-His-Avi (4 nM) was added to the mixture and allowed to incubate
at 25 °C for another 30 min. A mixture of streptavidin donor
beads and protein A acceptor beads were then added to a final concentration
of 10 μg/mL each. The resulting mixture was incubated at 25
°C for 40 min before reading the AlphaLISA luminescent signal
with a PheraSTAR plate reader. S1-His competition assay was performed
in the same manner with some changes S1-His (300 nM to 0.1 nM) was
mixed with ACE2-His-Avi (4 nM) and preincubated for 30 min at 25 °C,
and RBD-Fc was then introduced to the mixture before adding beads.
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6

SARS-CoV-2 Spike-RBD and ACE-2 Protein Binding Assay

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Human chimeric SARS-CoV-2 (2019-nCoV) Spike-RBD/Fc, SARS-CoV-2 (2019-nCoV) Spike-RBD/His and ACE-2/His proteins were purchased from Sino Biological, Dusseldorfer Eschborn, Germany. Human chimeric SARS-CoV-2 Omicron-RBD/Fc and IgG1 Fc proteins were purchased from R & D Systems, Minneapolis, MN, USA. Human chimeric ACE-2/Fc and SARS-CoV-2 Omicron-RBD/His proteins (from GenScript, Piscataway, NJ, USA) were also used.
Sotrovimab (from GlaxoSmithKline and Vir Biotechnology), Casirivimab and Imdevimab (from Regeneron Pharmaceuticals) mAbs were used. D3 mAb was expressed and purified as previously described [22 (link)].
HRP-conjugated anti-His antibody (Proteintech, Deansgate, Manchester, UK), anti-human IgG (Fab’)2 goat polyclonal antibody (Abcam, Banzarate, MI, Italy), anti-human Fc antibody (Sigma, St. Louis, MO, USA), and HRP-conjugated streptavidin (Biorad, Segrate, MI, Italy) were used for the detection of primary mAbs.
Human peptides derived from RBD portion of human SARS-CoV-2 Spike-RBD protein were synthesized from GenScript (Piscataway, NJ, USA) with the following aa sequences:
Peptide 1 Sequence: RKSNLKPFER;
Peptide 2 Sequence: GVEGFNCYFP;
Peptide 3 Sequence: RFASVYAWNRK;
Peptide 4 Sequence: RVQPTESIVR.
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7

SARS-CoV-2 Spike Protein and ACE2 Binding Assay

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ACE2-His-Avi (human ACE2 residues 18–740, C-terminal His-Avi tags) (Cat # AC2H82E6) was acquired from ACROBiosystems (Newark, DE). RBD-Fc (SARS-CoV-2 spike protein residues 319–541, C-terminal Fc tag) (Cat #40592-V02H), ACE2-His (ACE2 residues 1–740, C-terminal His tag) (Cat # 10108-H08H), and S1-His (spike protein residues 1–667, C-terminal His tag) (Cat # 40150-V08B1) were acquired from Sino Biological (Wayne, PA). All proteins were reconstituted in 1X PBS at pH 7.4 supplemented with 0.05 mg/mL bovine serum albumin (BSA). Streptavidin Donor beads (Cat # 6760002) and Protein A acceptor beads (Cat # AL101) were acquired from PerkinElmer (Waltham, MA).
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8

Competitive Assay for ACE2-RBD Interaction

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A competition assay was performed to confirm the AlphaLISA assay was sensitive the ACE2-His-Avi interactions with RBD-Fc. ACE2-His (Sino Biological, Wayne, PA) and S1-His (Sino Biological, Wayne, PA) are not recognized by either the Streptavidin Donor bead nor the Protein A Acceptor bead. A gradient of ACE2-His concentrations (1 μM to 0.01 nM) were mixed with RBD-Fc (4 nM). After 30 minutes of preincubation at 25 °C ACE2-His-Avi (4 nM) was added to the mixture and allowed to incubate at 25 °C for another 30 minutes. A mixture of Streptavidin donor beads and Protein A acceptor beads were then added to a final concentration of 10 μg/mL each. The resulting mixture was incubated at 25 °C for 40 minutes before reading the AlphaLISA luminescent signal with a PheraSTAR plate reader. S1-His competition assay was performed in the same manner with some changes S1-His (300 nM to 0.1 nM) was mixed with ACE2-His-Avi (4 nM) and preincubated for 30 minutes at 25 °C, then RBD-Fc was introduced to the mixture before adding beads.
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9

SARS-CoV-2 RBD Binding Kinetics

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Compounds were diluted to the appropriate concentrations (1–100 μM) with PBS. Purified SARS-CoV-2 RBD peptide (Sino Biological, Beijing, China) was conjugated with biotin using EZ-LinkTM Sulfo-NHS-Biotin (Genemore, Beijing, China) following the protocol reported by the manufacturer. The biotinylated SARS-CoV-2 RBD peptide was immobilized onto Super Streptavidin (SSA) biosensors (Fortebio, Fremont, CA, USA). ACE2-His (Sino Biological, China) was immobilized onto the biosensor coated with nickel-nitrilotriacetic acid (Ni-NTA, Fortebio, USA). After washing (60 s) and baseline step with PBS containing 2% DMSO (Merck, Darmstadt, Germany), the biosensor tips were immersed into the wells containing serial dilutions and allowed to associate (300 s). A dissociation step was then performed (300 s). KD values were calculated using a 1:1 binding model in Data Analysis Software 9.0 (Fortebio, CA, USA), using kdis as the dissociation constant (s−1) and kon as the association constant (1/Ms). KD is computed from kdis/kon.
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