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3 protocols using sc 133066

1

Monitoring CDK4 Regulation Under ER Stress

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HEK293 cells were obtained from the American Type Culture Collection (ATCC) and cultured under standard conditions recommended by the ATCC. HEK293 cells were cultured on 60-mm dishes to 40 to 50% confluence, treated with tunicamycin for 72 hours at the indicated concentrations to induce ER stress, and harvested for immunoblotting with anti-CDK4 antibody.
For immunoprecipitation with anti-CDK4, HEK293 Ctrl or shCHIP cells were incubated with tunicamycin (1 μg/ml) for 24 hours and then treated with 10 μM MG132 for 1.5 hours. The cells were lysed by sonication in RIPA lysis buffer as described previously (13 (link)). Four milligrams of protein lysates was incubated with 20 μl of anti-CDK4 agarose (#sc-260, Santa Cruz Biotechnology) overnight at 4°C. The beads were washed with RIPA buffer three times, and 60 μl of 1× SDS-PAGE loading buffer was added. The sample was boiled for 5 min. Half of the immunoprecipitates or 50 μg of the total protein lysate was loaded for SDS-PAGE and assayed by Western blotting. The membranes were probed with anti-HSP70 (SC-24, Santa Cruz Biotechnology), anti-HSP90 (SC-13119, Santa Cruz Biotechnology), anti-CDC37 (SC-13129, Santa Cruz Biotechnology), anti-CHIP (SC-133066, Santa Cruz Biotechnology), and anti–α-tubulin antibody (T6199, Sigma-Aldrich).
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2

Western Blot and Co-Immunoprecipitation Assay

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The following antibodies were used for western blotting: p53 (OP43; Merck Millipore), MDM2 (SMP14) (sc-965; Santa Cruz), AKT (2920; Cell Signaling Technology), phospho-AKT (Thr308) (9275; Cell Signaling Technology), phospho-AKT (Ser473) (9271; Cell Signaling Technology), PARP (9532; Cell Signaling Technology), caspase 3 (9661; Cell Signaling Technology), phospho-5′ AMP-activated protein kinase ([AMPK] bs-4002R; Bioss), AMPK (E-AB-30490; Elabscience Biotechnology Inc.), phospho-mammalian target of rapamycin ([mTOR] (E-AB-20929; Elabscience Biotechnology Inc.), mTOR (E-AB-32129; Elabscience Biotechnology Inc.), LC3A/B (4108; Cell Signaling Technology), α-tubulin (NB100-690; Novus Biologicals), GAPDH (10494-1-AP; Proteintech), HSP-40 (sc-59554; Santa Cruz Biotechnology), CHIP (sc-133066; Santa Cruz Biotechnology), and vinculin (GTX109749; GeneTex). For co-immunoprecipitation assay, cell lysates were incubated with p53 antibody (OP43, EMD Millipore, Billerica, MA) or HSP-40 antibody (sc-398766, Santa Cruz Biotechnology, Santa Cruz, CA) overnight at 4 °C. Then samples were precipitated with appropriate protein A/G beads with matched IgG as negative control. The precipitants were analysed in SDS-PAGE western blot.
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3

Proximity Ligation Assay for Protein Interactions in HCC

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PLA assay was performed using Duolink In Situ Orange Starter Kit Mouse/Rabbit (DUO92102, Sigma‐Aldrich) in HCC cells according to the standard technique. In brief, HCC cells cultured in glass bottom culture dishes were washed with phosphate‐buffered saline (PBS) solution, fixed with paraformaldehyde for 15 min, permeabilized with 0.5% Triton X‐100 for 10 min, and then subjected to blocking for 1 h, primary antibody incubation at 4 °C overnight, Duolink PLA probe (PLUS and MINUS) incubation for 1 h, ligation reaction for 30 min, PCR amplification for 100 min, and finally imaged under a confocal microscope after the final wash by adding Duolink in situ mounting medium containing DAPI. The primary antibodies applied in this assay included anti‐HSP90β (YM0342, Immunoway; ab203085, Abcam), anti‐STUB1 (sc‐133066, Santa Cruz), and anti‐YTHDF2 (ab246514, Abcam).
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