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5 protocols using mirna rt pcr kit

1

Quantification of Umbilical Cord Blood miRNAs

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Umbilical cord blood (volume: 3 ml) was gathered within 1 hr since delivery. After the umbilical cord blood was centrifuged at the speed of 3,500 rpm for 10 min, its serum was kept in the −80°C refrigerator. Total RNAs were isolated in line with the specifications of miRNeasy‐Mini‐Kit (Qiagen), and they were examined within 48 hr since delivery. The first cDNA strands were synthesized based on M‐MLV reverse transcriptase, and quantitative PCR reaction was carried out based on the miRNA RT‐PCR Kit (Takara) and ABI7300 system. With the primers of miR‐374a, miR‐210, and U6 (Guangzhou Ruibo Biotechnological Corporation, China), the PCR reaction was advanced in accordance with the following procedures: (i) predegeneration at 95°C for 30 s and (ii) 40 cycles of 95°C for 5 s, 55°C for 30 s, and 72°C for 30 s. Then, ABI7300 real‐time PCR software was arranged to analyze the relative copy number of genes. During the course of the experiment, the contamination of proteins within RNAs would be considered as tolerable when the ratios of OD260 and OD280 ranged between 1.8 and 2.1. Besides, the complexity of RNAs was evaluated according to the RNA Integrity Number (RIN) of the software, and the capillary electrophoresis was conducted with Agilent Bioanalyzer.
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2

Quantitative Real-Time PCR Assay

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Total RNA was extracted from breast tissue specimens or cells using the Trizol reagent (Invitrogen) following manufacturer's instructions. The cDNA was generated with random primers (Promega) using the Reverse Transcription System (Promega) or miRNA RT-PCR Kit (Takara, Shiga, Japan). Real-time PCR was carried out on a Roche LightCycler480 using SYBR Green Realtime PCR Master Mix (TOYOBO, Osaka, Japan). PCR reactions were run in triplicate for three independent experiments. U6 snRNA or β-actin was used as an internal control. The sequences of PCR primers are listed in Supplementary Table S1.
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3

Temporal Profiling of IPA1 and miRNA Transcripts

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Sequential stages of IM development were obtained by sampling the IM every 2 days starting from the booting stage (time of IM initiation) for RNA preparation. Total RNAs were prepared using a TRIzol kit according to the user's manual (Invitrogen). For detection of IPA1 transcripts, 1 μg of total RNAs was used for cDNA synthesis with a reverse transcription kit (TaKaRa). qRT-PCR was performed in a 20 μl volume with 2 μl cDNA, 0.5 μM gene specific primers (Supplementary Table 5) and 10 μl 2 × mix (TaKaRa) supplemented to 20 μl by water on an ABI 7900 real-time PCR machine according to the manufacturer's instruction (Applied Biosystems). The rice Actin gene (LOC_Os03g50885) was used as the internal control. Northern blot analysis was carried out to confirm IPA1 transcript levels with the rice Actin probed as loading control. For detection of miR156 and miR529, the same RNA were reverse-transcribed by the miRNA RT-PCR Kit (TaKaRa) and qRT-PCR was performed following the same procedure described above, and universal adaptor primers (supplied by the Kit) and Uni-miRNA primers were used with 5 s rRNA as internal control (Supplementary Table 5).
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4

Mouse Models in Molecular Signaling

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Female BALB/c mice (6~8 weeks old, 20 ± 2 g) were obtained from the Laboratory Animal Centre of Guangdong Medical College. All mice with access to chow and water ad libitum were acclimated to laboratory conditions (50±10% humidity and 14/10 h light/dark cycles at 22±1°C) for at least one week before use in experiments. The mice were euthanized by cervical dislocation after intraperitoneal administration of 1% pentobarbital sodium (50 mg/kg, Sigma, P3761) after the experimental endpoint. Mice did not become severely ill or moribund during the experiments. All procedures involving animals were approved by the Laboratory Animal Centre of Guangdong Medical College Animal Care and Use Committee and conform to the Guide for Care and Use of Laboratory Animals.
Anti-β-catenin polyclonal antibody (cell signaling 8480), anti-β-actin antibody (cell signaling 4967S), HRP-conjugated anti-mouse IgG (CST, 7076), and HRP-conjugated anti-rabbit IgG (CST, 7074) were used for western blot. Kits used included miRNA RT-PCR Kit (Takara, RR716), miRcute miRNA Kit (Tiangen, DP501), and Dual-Luciferase Reporter Assay System (Promega, E1910). Lipofectamine 3000 (Invitrogen, L3000015) was used for transfection experiments. All oligonucleotide including miRNA mimic, miRNA inhibitor and their controls were chemically synthesized by Biomics Biotechnologies Co., Ltd. (Suzhou, China).
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5

Quantitative PCR Analysis of microRNA and mRNA

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Real-time quantitative PCR (RT-qPCR) was conducted as previously described [5 ]. Briefly, total RNA containing small RNAs (microRNAs) was extracted from cells using mirVana™ Protein and RNA Isolation System™ Kit (Applied Biosystems, Ambion Inc) or TRI reagent (Sigma) according to the manufacturer's instructions. Total RNA and microRNA specific cDNA synthesis was performed with Prime Script RT Master Mix Perfect Real Time kit (DRR036A, Takara, China) and miRNA RT-PCR Kit (RR716, Takara, China), respectively. The resultant cDNA was diluted to a working concentration of 5ng/μl and stored at -20°C. The qRT-PCR reaction was run on ABI Prism 7500 system, using NCode™ EXPRESS SYBR® GreenER™ qPCR SuperMix Universal for miRNA RT-qPCR or Takara premix Ex Taq II (DRR820A, Takara, China) for others. Sequence for each primer was shown in Supplementary Table 1. Expression level of relative mRNA or microRNA was defined as the ratio of target gene expression level or microRNA expression level to 18S or U6 snRNA expression level, respectively, with that of the control sample set as 1.0.
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