The largest database of trusted experimental protocols

2 protocols using col1 α1

1

Hepatic Stellate Cell and Hepatocyte Gene Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
LX2, a human hepatic stellate cell line, and AML-12, a murine hepatocyte cell line, were obtained from Dr. David Moore at BCM. Cells were cultured in DMEM medium containing 5% FBS and 1% penicillin/streptomycin. For experiments, cells were stimulated with: media alone or TGF-β (10 ng/ml) (R&D Systems, 240-B-002) for 24 hours. Cells were harvested at 24 hours post-treatment for RNA analysis using TaqMan Gene Expression Cells-to-CT Kit (Thermo Fisher Scientific, AM1729). Real-time PCR was performed on an Applied Biosystems Step One Plus PCR System using validated TaqMan Gene Expression Assays for CDH11, Col1-α1, α-SMA, Snail, TGF-β, N-Cad, and 18s rRNA (Applied Biosystems). Transcript levels of mRNA in each sample were normalized using the 18s rRNA gene as an endogenous control. Data with each cell type were obtained from 4 individual experiments in triplicates and is presented as mean normalized transcript levels using the comparative Ct method (2ΔΔCt).
+ Open protocol
+ Expand
2

Quantitative Real-Time PCR for Bone Biology

Check if the same lab product or an alternative is used in the 5 most similar protocols
The vertebral body of the L3 and L6 (trabecular bone) and the flushed mid-diaphyseal tibias (cortical bone) were stored at −80°C in RNAlater post killing. RNA was extracted using TRIzol reagent (Life Technologies) followed by the RNeasy mini kit (Qiagen). Single-strand cDNA was synthesized using a High-Capacity cDNA Reverse Transcription kit (Applied Biosystems). Quantitative real-time PCR (qPCR) analyses were performed by using predesigned Taqman Assays and Taqman Fast Advance Master Mix (Applied Biosystems). The following predesigned real-time PCR assays were used for gene expression analysis: Acp5 (Trap; Mm00475698_m1), Ctsk (Mm00484036_m1), Tnfsf11 (Rankl; Mm00441908_m1), Alpl (Alp; Mm00475834_m1), Tnfrs11a (Rank; Mm00437135_m1), Tnfrsf11b (Opg; Mm0043545_m1), Bglap (Osteocalcin; Mm01741771_g1), Col1α1 (Mm00801666_g1), Runx2 (Mm00501580_m1), Sp7 (Osterix; Mm04209856_m1) (Applied Biosystems). The house-keeping gene 18S was used as the endogenous control in all analyses. Data are displayed as fold change relative to control.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!