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Iscript rt qpcr sample prep reagent

Manufactured by Bio-Rad

The IScript RT-qPCR Sample Prep Reagent is a laboratory product designed for the preparation of samples for reverse transcription quantitative polymerase chain reaction (RT-qPCR) analysis. It is used to extract and purify RNA from various samples, which can then be subjected to RT-qPCR testing.

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2 protocols using iscript rt qpcr sample prep reagent

1

Quantifying Stem Cell Markers via RT-qPCR

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Relative gene expression was performed through RT-qPCR. Cells were lysed in 100 μL iScript RT-qPCR Sample Prep Reagent (Bio-Rad), vortexed for 30 seconds and then centrifuged. 12 μL of the lysate was added to iScript cDNA synthesis kit (Bio-Rad) to a total volume of 20 μL and run for 1 hour at 42°C. 2 μL of each cDNA was added to a mixture containing: 17.5 μL Fast Start Essential DNA Probes Master, 13.75 μL water, 1.75 μL TaqMan GAPDH (VIC) probe (Thermo Fisher), and 1.75 μL of either Hs00167476_m1 TaqMan ALDH1A3 (FAM), Hs01053049_s1 TaqMan SOX2 (FAM), or Hs00356986_g1 TaqMan PLEC (FAM) probe (Thermo Fisher). Each sample was then mixed, pipetted in triplicate at a volume of 10 μL per well, and run on a Lightcycler 96 (Roche) under the program: 95°C for 10 minutes and 40 cycles of 95°C for 10 sec and 60°C for 30 seconds. Relative expression was calculated as an average of the triplicate using the ddCT method, with GAPDH expression as the normalization control, and standard deviation calculated and noted by error bars.
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2

Gene Expression Analysis by qRT-PCR

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Total RNA was extracted using the iScript™ RT-qPCR Sample Prep reagent (Bio-Rad), according to the manufacturer’s instructions. QuantiNova SYBR Green RT-PCR Kit (QIAGEN, Hilden, Germany) was used for qPCR, along with specific primers for 18S (FWD 5′-CGGCTACCACATCCACGGAA-3′, REV 5′-CCTGAATTGTTATTTTTCGTCACTACC-3′) PCSK9 (FWD 5′-CCTGCGCGTGCTCAACT-3′, REV 5′-GCTGGCTTTTCCGAATAAACTC-3′), ANGPTL3 (FWD 5′-GCCTGTTGGAGACTCAGATGG-3′, REV 5′-TAGCACCTTCTGTGCCTGGG-3′), FAS (FWD 5′-GCAAATTCGACCTTTCTCA-3′, REV 5′-GGACCCCGTGGAATGTCA-3′), ACLY (FWD 5′-TGCAAAGTGAAGTGGGGTGA-3′, REV 5′-TTTGGGGTTCAGCAAGGTCA-3′), ACC1 (FWD 5′-ATGTCTGGCTTGCACCTAGTA-3′, REV 5′-CCCCAAAGCGAGTAACAAATTCT-3′), PCSK9 (FWD 5′-CCTGCGCGTGCTCAACT-3′, REV 5′-GCTGGCTTTTCCGAATAAACTC-3′), SCD1 (FWD 5′-AAAGCGAGGTGGCCATGTTA-3′, REV 5′-TCATGCCTCAAAACTGCCCT-3′).
The analyses were performed with the CFX96 Touch Real-Time PCR Detection System (Bio-Rad) with cycling conditions of 45 °C for 10 min, 95 °C for 5 min, and a repetition of 40 cycles at 95 °C for 5 s followed by 30 s at 60 °C. The data were expressed as Ct values and used for relative quantification of targets with ΔΔCt calculations. The ΔΔCt values were determined by multiplying the ratio value between the efficiency of specific primers and housekeeping 18S. The efficiency was calculated as ((10(−1/slope)) − 1) × 100.
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