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Ph strips

Manufactured by Merck Group
Sourced in Belgium, Germany, United States

pH strips are a type of laboratory equipment used to measure the pH level of a solution. They are made of paper impregnated with pH-sensitive dyes that change color when dipped into a solution, indicating the pH value.

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5 protocols using ph strips

1

Evaluating Pneumococcal Cell Killing

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S. pneumoniae 116_8 cells grown overnight were diluted 1:100 in fresh THBye and allowed to grow until the exponential phase. Cells were harvested (5000×g, 5 min, RT) and resuspended in PBS. The formulations’ efficacy in killing S. pneumoniae cells after passing through the human TM was evaluated as described in 2.6.1. However, for this experiment, non-labeled MSlys was used. Samples were taken at 2, 4, 6, 24, 48 and 72 h through the side arm and part of them (100 μL) mixed with an equivalent volume of a S. pneumoniae suspension. The mixture was incubated at 37 °C with 5% CO2, and the antibacterial effect was evaluated by measuring the OD620 after 30 min, 1 h, and 2 h. To confirm the protein integrity, part of the collected samples (50 μL) was analyzed by SDS-PAGE, followed by Coomassie blue staining and silver staining. Moreover, the pH of the samples was measured using pH strips (P4786, Sigma Aldrich).
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2

Vaginal Atrophy Assessment Protocol

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Vaginal atrophy was scored by one observer blinded to the evaluated group with the Vaginal Health Index (VHI). 16 The VHI is a clinical noninvasive semiquantitative assessment of vaginal elasticity, fluid volume, moisture, epithelial injury, and pH (Table 2). The vagina was also inspected for abnormalities as erythema, petechiae, bleeding, inflammation, erosion, edema, and scarring. A vaginal wet smear with a saline soaked Q-tip was taken before taking biopsies. The swab was rolled over a slide glass, allowed drying, stained with Papanicolaou, and quantified for the presence of parabasal, intermediate, and superficial cells. 17 Clinically, less than 5%
Active biomechanics X Passive biomechanics X The clinical pH scale was adjusted to the findings in menopausal sheep. Reproductive ewes have a vaginal pH of 6.7 AE 0.4. 17 Postmenopausal sheep had a higher pH, ranging from 6.6 up to 9.0.
superficial cells indicates vaginal atrophy. 17 The pH was measured by two methods. The first semiquantitative method using pH strips (Sigma-Aldrich, Diegem, Belgium; range 7-14, resolution 0.5) was necessary as it is part of the VHI. A second quantitative biochemical test was done with a pHmeter-1000L (VWR, Leuven, Belgium; range: À2 to þ20; resolution 0.001). 18
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3

Proteome Digestion Protocols Comparison

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Proteome aliquots of 100 μg
were individually digested by legumain, GluC, or trypsin. The digestion
with legumain was carried out in a reaction containing 0.1 M MES (pH
6.0), 0.1 M NaCl, and 2 mM DTT at a protease to proteome ratio of
1:50 (m:m), unless otherwise stated. For GluC (SERVA Electrophoresis,
Heidelberg, Germany) digestion, the same amount of proteome was digested
in PBS (pH 7.4) with a protease to proteome ratio of 1:50, whereas
a 1:100 ratio was used for trypsin (SERVA Electrophoresis, Heidelberg,
Germany) digestion in 0.1 M HEPES (pH 7.4) supplemented with 5% acetonitrile
and 5 mM CaCl2. The pH was confirmed using pH strips (Merck,
Darmstadt, Germany), and the digestions were carried out at 37 °C
overnight. For pH shift assays with legumain, an aliquot of the MEF
proteome was digested at pH 6.0 for 5 h at 37 °C, and then the
pH was lowered by the stepwise addition of 1 M HCl until pH 4.0 was
reached. An additional 2 μg of legumain and 1 mM DTT were added
and incubated for another 5 h at 37 °C.
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4

Synthesis of Chiral Amino Acid Precursor

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The standard compounds L-glutamine, D-glutamine, L-glutamic acid, HPLC grade methanol and acetonitrile, 18-crown-6, acetone, trifluoroacetic acid, and concentrated sulfuric acid were purchased from Sigma-Aldrich corporation, USA. Anhydrous DMF, acetonitrile extra dry and cesium bicarbonate, were purchased from Acros Organics, USA. All the gases hydrogen (HY R300), helium (HE R300) and anhydrous ammonia (AM AH200N705) were purchased from Airgas Inc. USA. Deionized Ultra-Filtered Water (DIUF), ethyl ether anhydrous stabilized with BHT were purchased from Fisher scientific, USA. Ethanol 200 proof was purchased from Decon laboratories Inc. PA, USA. All the chemicals were used without any further purification. The seppak cartridges, C18 plus, tC18 vac 3 cc, tC18 plus short and Silica plus were purchased from Waters corporation, USA. The precursor (S)-tert-butyl-2-((tert-butoxycarbonyl)amino)-4-iodobutanoate was purchased from ABX, Advanced biochemical compounds, Germany. Millex GS 0.22 μm filters were from Merck Millipore Ltd. pH strips were from EMD Millipore Corporation, MA, USA. Semi-preparative HPLC column (Macherey-Nagel, VP250/10 Nucleodur C18, HTech, 5 μm was obtained with Synthra HCN Plus synthesis module which was purchased from Synthra GmbH, Hamburg, Germany. QC HPLC column Astec CHIROBIOTIC™ T chiral HPLC column was purchased from Sigma-Aldrich Corporation, USA.
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5

Tau Protein Fractionation and Analysis

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Sequential extraction of tau protein was performed to test the effect of MARK4 on tau protein solubility. We performed fractionation analysis as previously described for PS19 mice.34 (link),37 (link) Briefly, one brain hemisphere was homogenized in 5 vol high-salt reassembly buffer (HS-RAB: 100 mM MES, pH 7.0, 1 mM EGTA, 0.5 mM MgSO4, 0.75 M NaCl and 0.1 mM EDTA + proteinase inhibitors and phosphatase inhibitors) using a Teflon pestle homogenizer, and the homogenate was centrifuged at 50 000 × g in an Optima MAX-TL ultracentrifuge (Beckman Coulter, Brea, CA, USA) for 40 min at 4°C to collect the supernatant as an HS-RAB soluble fraction. The pellet was homogenized in 1 M sucrose/RAB buffer, and the solution was centrifuged at 50 000 × g for 20 min, followed by pellet homogenization in 1 vol RIPA buffer and centrifugation at 50 000 × g for 20 min at 4°C to collect the supernatant as a RIPA soluble fraction. Next, we extracted a RIPA-insoluble pellet with 1 vol of cold 70% formic acid solution and centrifuged it at 15 800 × g for 20 min at 4°C to collect the supernatant as an FA soluble fraction. The FA fraction was diluted in 1:10 (v/v) neutralization buffer (1 M Tris base and 0.5 M Na2HPO4), and the pH was checked using pH strips (Merck). All fractions were processed for western blotting as described above.
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