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Ace h3

Manufactured by Merck Group

The Ace-H3 is a laboratory equipment designed for general laboratory use. It is a multi-purpose instrument that can perform a variety of tasks. The Ace-H3 is capable of handling a range of sample types and can be used in various research and testing applications. The specific details and intended use of this product are not available.

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4 protocols using ace h3

1

Chromatin Profiling of Muscle Cell Epigenetics

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Quantitative PCR (qPCR), immunoblotting, and chromatin immunoprecipitation (ChIP) assay were performed as previously described (15 (link)). For the ChIP assay, C2C12 or primary human myotubes were fixed with 1% formaldehyde and sonicated to produce chromatin lysates. The lysates were precleared with Protein-G agarose beads and immunoprecipitated overnight with antibodies against Ace-H3 (Millipore), Ace-H4 (Millipore), H3K4m3 (Millipore), H3K9m2 (Abcam), or control IgG in the presence of BSA and salmon sperm DNA. The next day, Protein-G agarose beads were added to each immunoprecipitation reaction for 1 h, followed by an extensive wash and reverse crosslink. DNA was eluted from the beads and purified using a PCR Purification kit (Invitrogen) and subsequently analyzed by qPCR using primers located on the proximal Baf60c and Deptor promoters. Primers are available upon request.
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2

Quantifying Ischemic Protein Changes

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Western blotting was used to determine the quantity of target proteins being made in the ischemic hemisphere. Briefly, brain tissues were milled in liquid nitrogen, and proteins were extracted using RIPA cleavage buffer. Protein intensity, with BSA as a standard, was measured according to the Bradford method. Each sample was separated using 12% SDS-PAGE and transferred onto a methanol-activated PVDF membrane (Millipore, Burlington, MA, USA) by wet electrotransfer. The membranes were blocked for 1.5 h at room temperature with 5% BSA. The membranes were then incubated with primary antibodies against Ace-H3 (Millipore, cat #9717, 1:1000), H3K9ace (Cell Signaling Technology, cat #6949, 1:1000), H3K27ace (Cell Signaling Technology, cat #4353, 1:1000), Histone3 (Abcam, ab1791, 1:1000), Bcl-2 (Abcam, ab59348, 1:1000), Bax (Cell Signaling Technology, cat #2772, 1:1000), caspase-3 (Cell Signaling, cat #9662, 1:1000), cleaved caspase-3 (Cell Signaling, cat #9664S, 1:1000) and GAPDH (SAB, cat #21612S; 1:1000). The total amount of ECL liquid was absorbed in a 1:1 ratio (solution A: B) to uniformly cover the entire film and was observed using an AI600 imaging system (GE Healthcare, USA). GAPDH was used as an internal reference for comparison of grayscale values.
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3

ChIP Assay for Histone Modifications

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ChIP assay was performed according to the protocol developed by Upstate Biotechnology as described (Meng et al., 2013 (link)). Briefly, treated myotubes were fixed with 1% formaldehyde and sonicated to produce chromatin lysates. The lysates were pre-cleared with Protein-G agarose beads and immunoprecipitated overnight with antibodies against Ace-H3 (Millipore, 06–599), H3K4m3 (Millipore, 07–473), H3K9m2 (Abcam, ab1220), or control IgG in the presence of BSA and salmon sperm DNA. The next day, Protein-G agarose beads were added to each immunoprecipitation reaction for 1 h, followed by extensively wash and reverse crosslink. DNA was eluted from the beads and purified using a PCR Purification Kit (Invitrogen) and subsequently analyzed by qPCR using primers located on the proximal promoter regions of mouse Baf60c and Deptor genes (Table S1).
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4

Chromatin Immunoprecipitation of CAR Promoter

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HEK293T cells were transiently transfected with HA-CAR and Myc-Baf60a for 24 h. Total lysates or immunoprecipitated proteins were analyzed by western blot using antibodies against c-Myc (Sigma, C3956; 1:2,000) or HA (Santa Cruz, sc-66181; 1:2,000). ChIP assay was performed according to the protocol developed by Upstate Biotechnology as described (Meng et al., 2014 (link)). Briefly, liver nuclei or primary hepatocytes were fixed with 1% formaldehyde and sonicated to produce chromatin lysates. The lysates were pre-cleared with Protein-G agarose beads and immunoprecipitated overnight with antibodies against Ace-H3 (Millipore, 06-599), H3K4m3 (Millipore, 07-473), Brg1 (Santa Cruz, sc-17796×), or control IgG in the presence of BSA and salmon sperm DNA. The next day, Protein-G agarose beads were added to each immunoprecipitation reaction for 1 h, followed by extensively wash and reverse crosslink. DNA was eluted from the beads and purified using a PCR Purification Kit (Invitrogen) and subsequently analyzed by qPCR using primers located on the proximal CAR promoter. Primers are available upon request.
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