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1 002 protocols using bx41 microscope

1

Lung Histological Analysis in Mice

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Before collecting lung, mice were perfused with PBS 1X. Lungs from infected and uninfected mice were inflated by injecting 1.0 mL of 10 % buffered formalin through the same catheter used to perform BALF. Lungs were removed fixed in formalin and embedded in paraffin. Lungs sections of 5-mm thickness were stained with haematoxylin-eosin [59 (link)]. Analysis of tissue sections was performed in a Olympus BX41 microscope (Melville, NY, USA) at a magnification of ×200. The number of mononuclear cells in lung tissue was determined by the point-counting technique across 20 random, non-coincidents microscopic fields in an Olympus BX41 microscope at a magnification of ×1000 [60 (link)].
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Immunohistochemical Analysis of COX-1 and COX-2 in Skin

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Immunohistochemistry was performed to assess COX-1 and COX-2 skin expression, with Anti-COX-1 Antibody 5F6/F4 ab695 (Abcam) and Monoclonal Mouse Anti-Human COX-2 Clone CX 294 (Dako). COX-1 and COX-2 expression was evaluated in the epidermis and dermis inflammatory infiltrations.
Both cyclooxygenases were assessed semi-quantitatively at two time points, in five fields of view, using an Olympus BX41 microscope at 400× magnification. Immunoexpression was evaluated on a scale of 0–3 points, where 0 = no expression, 1 = immunoexpression up to 30%, 2 = immunoexpression between 30% and 60%, and 3 = immunoexpression above 60%.
Monoclonal mouse anti-human COX-1 antibody (Abcam ) (1 : 400 dilution) and monoclonal mouse anti human COX-2 (DakoCytomation) (1 : 50 dilution) were used to assess COX-1 and COX-2 skin expression. The samples were first rinsed twice in TBS, treated with peroxide Labelled Polymer Reagent for 30 min, and then rinsed twice more with TBS. They were then treated with diaminobenzidine (DAB) for 5 min. The staining procedure with hematoxylin was identical for all the samples. The sections were dehydrated in a series of alcohols and cleared in xylene. Finally, the specimens were observed under an Olympus BX41 microscope.
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Histological Analysis of Liver Fibrosis

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Liver tissues stored in 10% neutral buffered formalin were dehydrated using a Leica tissue processor (Leica, Australia). The dehydrated samples were embedded in paraffin and cut into 4-μm-thick sections. Mayer’s Hematoxylin and Eosin (H&E) staining was performed and images were taken from Olympus BX41 microscope with a 20 times objective lens using an Olympus DP72 digital camera (Olympus, Australia). Paraffin-embedded sections were stained with picrosirius red stain to visualize collagen I and III fibers. Slides were quantified by randomly selecting five non-overlapping fields of view per slide representing one mouse using an Olympus BX41 microscope with a 20× objective lens and an Olympus DP72 digital camera (Olympus, Australia). The five regions of interest (ROIs) were selected on the liver slides, with care taken to avoid large hepatic vessels or artifacts. Sections were blinded and scored by two independent observers (n = 8–10). The mean of value was calculated for each experimental group using the threshold function in the ImageJ software package (NIH Image, Bethesda, MD, United States). Data are represented as relative fold change to CH group.
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4

Melanoma Cell Migration Assay

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The migration ability of melanoma cells was determined in vitro using Boyden Chambers (Gaithersburg, MD) in which the two chambers were separated with Millipore membranes (8 μM pore size), as detailed previously [15 (link), 24 (link)]. The membranes were examined microscopically and cellular migration was determined by counting the number of stained cells on membranes in at least 3-4 randomly selected fields using an Olympus BX41 microscope with 10x magnification. Representative photomicrographs were obtained using a Qcolor5 digital camera fitted to an Olympus BX41 microscope. Cell migration experiments were repeated to verify the results.
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Quantifying Lung Cell Infiltration in Murine Infection

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Perfused lungs from infected and uninfected mice were inflated by injecting 1.0 mL of 10% buffered formalin through the same catheter used to perform BALF. Lungs were removed fixed in formalin and embedded in paraffin. Lungs sections of 5-µm thickness were stained with haematoxylin–eosin. Analysis of tissue sections was performed in an Olympus BX41 microscope (Melville, NY, USA) at a magnification of 200×. The number of mononuclear cells in lung tissue was determined by the pointcounting technique across 20 random, non-coincidents microscopic fields in an Olympus BX41 microscope at a magnification of 1000×.
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Immunohistochemical Analysis of Kidney Tissues

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Kidney tissues were snap frozen embedded in OCT. Immunohistochemistry was performed as previously described [33 (link)]. Photomicrographs (400× or 200×) were taken using an Olympus BX41 microscope (Center Valley, PA). The following primary antibodies were used: anti-CD4, anti-CD8 (both from eBioscience, San Diego, CA), and anti-insulin (Dako North America, Carpinteria, CA). Immunohistochemistry was performed as well on formalin-fixed, paraffin-embedded tissue sections related to the graft. Photomicrographs (original magnification 40×) were taken using an Olympus BX41 microscope (Center Valley, PA). The antibodies used were Mouse anti-CD31 (PECAM-1) (Life Technologies, Carlsbad, CA, USA). Histology was evaluated by an expert pathologist.
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Immunohistochemical Analysis of Adipose Tissue

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Tissues were isolated and placed in formalin. The tissues were then decalcified, paraffin embedded, and sectioned serially at a depth of 2-4 μ. Paraffin was removed using xylene and tissues rehydrated and immunostained, for instance, using anti-Ucp1 (Novus Biologicals, Centennial, CO, NB100-2828, goat polyclonal, 1:100 dilution) and anti-Mrc1 (Abcam, b64693, rabbit polyclonal, 1:200 dilution) antibodies. Secondary antibodies were linked with Alexafluor 488 and 597 dyes. Tissues were counterstained and covered with ProLong Glass Antifade Mountant with NucBlue (Invitrogen, P36985). Stained tissue sections were examined using an Olympus BX41 microscope (Olympus Corporation of the Americas, Waltham, MA) equipped with a reflected fluorescence system or by confocal microscopy (LSM 510 META, Zeiss, Inc., Thornwood, NY, USA) using a 20X/0.75NA objective lens. To ensure signal specificity, controls were performed and the specific absorption spectrum from each primary-secondary pair was captured. To locate the tissue regions, every 5th slide was stained with hematoxylin (Harris Hematoxylin, American Mastertech, Lodi, CA) and eosin (Eosin Y Phyloxine B solution, Electron Microscopy Sciences, Hatfield, PA). Hematoxylin and eosin images were captured by bright-field microscopy using the Olympus BX41 microscope.
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Tissue Histology and Lipid Staining

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Hematoxylin and eosin (H&E) staining was performed according to standard method. For the paraffin section, liver was fixed in 4% paraformaldehyde (Biosharp, Hefei, China). After 24 h fixation, the tissue was dehydrated and embedded in paraffin. The tissue was then cut into 5 μm slices using a Leica RM22559 microtome (Leica, Wetzlar, Germany). The section was dewaxed, hydrated, and then stained with hematoxylin and eosin. The images were captured using an Olympus BX41 microscope (Olympus Co., Ltd., Tokyo, Japan).
For oil red O staining, cells were fixed with 4% paraformaldehyde at room temperature for 1 h and washed three times with phosphate-buffered solution (PBS, Gibco, New York, NY, USA). Cells were then stained with 0.3% oil red O (Sigma, St. Louis, MO, USA) solution for 1 h at room temperature. After rinsing with PBS, the cells were snapped with an Olympus BX41 microscope (Olympus Co., Ltd., Tokyo, Japan).
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9

Quantification of CD73 Expression in FFPE Tumor Sections

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Formalin-fixed paraffin-embedded tumor sections (4 μm) were deparafinized and rehydrated in a series of decreasing concentrations of ethanol. Antigen retrieval was performed at 110°C for 10 minutes using 10 mM sodium citrate buffer pH 6.0 (Decloaking Chamber, Biocare Medical). The samples were then incubated in 3% H2O2 (10 minutes). Tissue sections were blocked using Background Snipper (Biocare Medical) and incubated with CD73 (1:200, Cell Signaling (D7F9A, #13160) overnight at 4°C. A universal Dako-Labeled Streptavidin-Biotin2 System, Horseradish Peroxidase (LSAB2) System (#K0675), and Dako DAB (#K0673) were used to develop the staining. Tumor images (9–36 per sample, 10X magnification) were captured using a BX41 Olympus microscope. CD73 staining was quantified using QuPath software (57 ). Classifiers identifying tumor and stromal cells were built by manual selection of training data, then analyzed. Thresholds were set at 0.15 and DAB OD mean measured.
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10

Immunocytochemistry and Image Analysis

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EC cell lines, grown on glass coverslips, and mouse uterine cryosections were fixed with 4% paraformaldehyde, incubated with 0.1% Triton X-100, and blocked with Background Snipper (Biocare Medical). Coverslips were labeled with CD73 (1:200, Cell Sciences (4G4, #HM2215) and/or Alexa Fluor 488 phalloidin (F-actin, Invitrogen). Cryosections were doubled-labeled with E-cadherin and phalloidin. Coverslips and cryosections were incubated overnight at 4°C, followed by appropriate secondary antibody. Images were captured using a BX41 Olympus microscope and analyzed using CellSens Dimension Software (Olympus). F-actin intensity in endometrial epithelial cells (glandular and luminal) was measured by manual selection (region of interest, ROI) and Adaptive Threshold. ROI selections were guided by E-cadherin positivity and H&E serial sections (data not shown).
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