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13 protocols using grinding tubes

1

Western Blot Analysis of PrP^res in Transgenic Mouse Brains

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Brain tissue was homogenized in 5% glucose in distilled water in grinding tubes (Bio-Rad) and adjusted to 10% (w/v) by using a TeSeETM Precess 48TM homogenizer (Bio-Rad) following the manufacturer’s instructions. To determine the presence of PrPres in transgenic mouse brains, 100 µL of 10% brain homogenate were analyzed by Western blotting as previously described [7 (link)] with some modifications. Briefly, digestion was done with 40 µg/mL of proteinase K in buffer 5% sarkosyl, 5% Triton X100, 1 M Urea and 16 mM Tris–HCl (pH 9.6) at 60 °C for 15 min. Samples were electrophoresed in 12% Criterion XT Bis–Tris Gel (BioRad). For immunoblotting, membranes were incubated with 12B2 PrP monoclonal antibody (epitope 93WGQGG97 of the sheep PrP sequence) at a final concentration of 1 μg/mL. Immunocomplexes were detected with horseradish peroxidase-conjugated anti-mouse IgG (Amersham Pharmacia Biotech) after incubating the membranes for 1 h, and blots were developed with chemiluminescent substrate ECL Select (GE Healthcare Amersham Biosciences). Images were captured using ChemiDoc XRS + System and then processed using Image Lab 5.2.1 Software.
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2

PrP^res Detection in Transgenic Mouse Brains

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We homogenized frozen brain tissues (175 ± 20 mg) in 5% glucose in distilled water in grinding tubes (Bio-Rad, Hercules, CA, USA) adjusted to 10% (wt/vol) by using a TeSeE Precess 48TM homogenizer (Bio-Rad), according to the manufacturer’s instructions. We determined presence of PrPres in transgenic mouse brains by Western blot, using the reagents of the ELISA commercial test TeSeE (Bio-Rad). Based on a previously described protocol (31 (link)), we treated 10–100 μL of 10% wt/vol brain homogenates with proteinase K; the resulting samples were loaded in 12% Bis-Tris Gel (Criterion XT; Bio-Rad). We transferred proteins electrophoretically onto PVDF membranes (Millipore, Billerica, MA, USA), which were blocked overnight with 2% BSA blocking buffer (Sigma-Aldrich, St. Louis, MO, USA). For immunoblotting, we incubated with Sha 31 (44 (link)) monoclonal antibody (mAb) at a concentration of 1 µg/mL to identify the 145-WEDRYYRE-152 epitope of the human PrPC sequence. To detect immunocomplexes, we incubated the membranes for 1 h with horseradish peroxidase conjugated anti-mouse IgG (GE Healthcare Amersham Biosciences, Little Chalfont, UK). Immunoblots were developed with enhanced chemiluminiscence ECL Select (GE Healthcare Amersham Biosciences). Images were captured using the ChemiDoc WRS+ System (Bio-Rad) and processed using Image Lab 5.2.1 software (Bio-Rad).
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3

Western Blot Detection of PrPres

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175 ± 20 mg of frozen brain tissue was homogenised in 5% glucose in distilled water in grinding tubes (Bio‐Rad) adjusted to 10% (w/v) using a TeSeETM Precess 48TM homogenizer (Bio‐Rad) following the manufacturer's instructions. The presence of PrPres in transgenic mice brains was determined by WB using the reagents of the ELISA commercial test (TeSeE, Bio‐Rad). About 10–100 µL of 10% (w/v) brain homogenate was analysed as previously described56 using 12% Bis‐Tris Gel (Criterion XT, BioRad). For immunoblotting, Sha31 mAb52 was used at a concentration of 1 µg/mL. Sha31 recognises145‐YEDRYYRE‐152 epitope of the human PrPC sequence. Immunocomplexes were detected as described above for brain PrPC analysis. About 5–50 µL of 10% (w/v) brain homogenate equivalent was loaded per lane in the Western blot.
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4

Western Blot Analysis of Brain PrPres

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Brain PrPres was analysed as previously described7 (link),14 (link). Briefly, 175 ± 20 mg of frozen brain tissue were homogenized in 5% glucose in distilled water in grinding tubes (Bio-Rad) adjusted to 10% (w/v) using a TeSeETM Precess 48TM homogenizer (Bio-Rad) following manufacturer instructions. Presence of PrPres in transgenic mice brains was determined by Western blot, following the procedure described below and using the reagents of the ELISA commercial test (TeSeE, Bio-Rad). Based on a previously described protocol48 (link) 10–100 μl of a 10% (w/v) brain homogenate were treated with proteinase K and the resulting samples were loaded in 12% Bis-Tris Gel (Criterion XT, BioRad). Proteins were transferred electrophoretically onto PVDF membranes (Millipore). For immunoblotting, monoclonal antibodies 12B2 and Sha3149 (link) were used at a concentration of 1 µg/mL. Sha31 recognizes 145-YEDRYYRE-152 epitope of the macaque/human PrPC sequence. Immunocomplexes were detected as described above for brain PrPC analysis. N-glycosidase F (PNGaseF, New England Biolabs) was used according to manufacturer’s instructions with minor modifications.
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5

Detecting PrP^res in Transgenic Mouse Brains

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Brain tissue was homogenized in 5% glucose in distilled water in grinding tubes (Bio-Rad) and adjusted to 10% (w/v) by using a TeSeE™ Precess 48TM homogenizer (Bio-Rad) following the manufacturer’s instructions. To determine the presence of PrPres in transgenic mouse brains, 100 μL of 10% brain homogenate were analyzed by WB as previously described14 (link). For immunoblotting, membranes were incubated with Sha31 PrP monoclonal antibody (epitope 148-YEDRYYRE-155 of the goat PrP sequence)26 (link) at a final concentration of 1 μg/mL. Immunocomplexes were detected with horseradish peroxidase- conjugated anti-mouse IgG (Amersham Pharmacia Biotech) and blots were developed with chemiluminescent substrate ECL Select (GE Healthcare Amersham Biosciences). Images were captured using ChemiDoc XRS + System and then processed using Image Lab 5.2.1 Software.
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6

Detecting PrPres in Transgenic Mouse Brains

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We homogenized frozen brain tissues (175 + 20 mg) in 5% glucose in distilled water in grinding tubes (Bio-Rad, https://www.bio-rad.com) adjusted to 10% (wt/vol) by using a TeSeE Precess 48TM homogenizer (Bio-Rad). We determined the presence of PrPres in transgenic mouse brains by using WB, using the reagents of the ELISA commercial test TeSeE (Bio-Rad). We prepared brain homogenates (10–100 µL of a 10% [wt/vol]) as previously described (18 (link)) and loaded samples into 12% Bis-Tris Gel (Criterion XT; Bio-Rad). We transferred proteins electrophoretically onto polyvinylidene fluoride membranes (Millipore, https://www.sigmaaldrich.com) and blocked overnight with 2% bovine serum albumin blocking buffer. We incubated membranes with Sha31 (25 (link)) mAb at a concentration of 1 µg/mL. Sha31 recognizes the 145-WEDRYYRE-152 epitope of the human-PrPC sequence, which is conserved in sheep and bovine sequences. We detected immunocomplexes by incubating the membranes for 1 h with horseradish peroxidase conjugated antimouse IgG (GE Healthcare Amersham Biosciences, https://www.gelifesciences.com). We developed immunoblots with enhanced chemiluminescence in ECL Select (GE Healthcare Amersham Biosciences) and captured images by using the ChemiDoc WRS+ System and processed them by using Image Lab 5.2.1 software (both Bio-Rad).
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7

Detection of PrP Res in Transgenic Mouse Brains

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A mass of 175 mg ± 20 mg of frozen brain tissue was homogenized to a concentration of 10% (wt/vol) in 5% glucose in distilled water in grinding tubes (Bio-Rad), using a TeSeE Precess 48 homogenizer (Bio-Rad). The presence of PrPres in transgenic mice brains was determined by means of WB analysis, as described elsewhere [5 (link), 27 (link)]. Ten to 100 μL of a 10% (wt/vol) brain homogenate was digested with Proteinase K, loaded on 12% Bis-Tris Gel (Criterion XT; Bio-Rad), and detected with Sha31 monoclonal antibody [28 (link)].
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8

Tissue Sampling and Homogenization Protocol

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Tables 2 and 3 shows the tissue tested in each patient. Tissues samples were collected post mortem using disposable equipment, snap frozen, and stored at − 80 °C. Strict precautions were undertaken to prevent potential cross contamination of samples during collection, handling and storage. Frozen samples were homogenized in 5% glucose in distilled water in grinding tubes (Bio-Rad) adjusted to 10% (w/v) using a TeSeE Precess 48 homogenizer (Bio-Rad). Homogenates were then filtered through a 20 g needle with a syringe.
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9

Western Blotting Analysis of Brain PrPres

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Western blotting analysis was done as previously described [23 (link)]. Briefly, 175 + 20 mg of frozen mouse brain tissue were homogenized in 5% glucose distilled water in grinding tubes (Bio-Rad) and adjusted to 10% (wt/vol) by using a TeSeE Precess 48TM homogenizer (Bio-Rad). To detect brain PrPres 100 μL of 10% (wt/vol) brain homogenate were subjected to digestion with 40 μg/mL of PK in buffer 5% sarkosyl, 5% Triton X100, 1 M Urea, and 16 mM Tris–HCl (pH 9.6) at 60 °C for 15 min. Digested samples were loaded samples into 12% Bis-Tris Gel (Criterion XT; Bio-Rad). After electrophoretic transference of proteins onto polyvinylidene fluoride membranes (Millipore) and blocking overnight with 2% bovine serum albumin blocking buffer, membranes were incubated with 12B2 [24 (link)] and Sha31 [25 (link)] mAb at a concentration of 1 μg/mL. 12B2 recognizes the 89-WGQGG-93 epitope of the human-PrPC sequence while Sha31 recognizes the 145-WEDRYYRE-152 epitope of the human-PrPC sequence. Immunocomplexes were detected by 1 h membrane incubation with horseradish peroxidase conjugated antimouse IgG (GE Healthcare Amersham Biosciences) and development with enhanced chemiluminescence in ECL Select (GE Healthcare Amersham Biosciences). Images were captured using the ChemiDoc WRS+ System and processed them by using Image Lab 5.2.1 software (both Bio-Rad).
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10

Homogenization of frozen hGH-iCJD brain

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For each hGH-iCJD case, 175 ± 20 mg of frozen brain tissue was homogenized in 5% glucose in distilled water in grinding tubes (Bio-Rad) adjusted to 10% (w/v) using a TeSeE™ Process 48™ homogenizer (Bio-Rad).
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