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168 protocols using jem 1400 plus transmission electron microscope

1

Ultrastructural Analysis of Airway Epithelia

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The biopsy samples of the bronchi and the lung were fixed in a mixed fixative solution containing 2.5% glutaraldehyde and 4% paraformaldehyde, respectively, for 2 h at 4°C, and surface epithelial regions were taken by using ZEISS Axio Zoom V16 stereo light microscope (Carl Zeiss, Brock Michelsen A/S, Denmark), then fixed in 1% osmium tetroxide, dehydrated through a graded series of ethanol (30%, 50%, 70%, 90%, and 100%), and embedded in pure Epon 812 resin. Sections (70 nm) from samples were stained with uranyl acetate and lead citrate. Imaging was performed at 100 kV using a Hitachi JEM-1400 PLUS transmission electron microscope (TEM) (Japan Electron Optics Laboratory Co., Ltd.). Digital images of the specimens were acquired using an EMSIS VELETA G3 CCD camera and analyzed by experienced electron microscopists.
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2

Morphology of Mouse Cardiac Mitochondria

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The morphology of mouse ventricular mitochondria was observed by electron microscope. In brief, hearts excised from mice were immediately fixed in 2.5% glutaraldehyde (G1102, Servicebio, China). Then, ultrathin sections were examined with a JEM-1400plus transmission electron microscope (Japan Electron Optics Laboratory Co., Ltd, Tokyo). Mitochondrial area and aspect ratio (the ratio of length/width) were quantified by ImageJ. At least 100 randomly selected mitochondria were analyzed for each group.
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3

Ultrastructural Analysis of SARS-CoV-2 and HCoV-229E

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Huh7 cells infected with HCoV-229E and Vero E6 cells infected with SARS-CoV-2 were cultured at 37 °C for 48–72 h, and cells exhibiting cytopathic effects (CPEs) were obtained. BALF was obtained from ICU patients with confirmed COVID-19. Cells were centrifuged at 800–1,200 rpm for 5 minutes, and the supernatant was removed, inactivated by fixation and processed for standard TEM as follows: the sample was fixed in a mixed fixative solution containing 2.5% glutaraldehyde and 4% paraformaldehyde for 2 h at 4 °C, fixed in 1% osmium tetroxide, dehydrated through a graded series of ethanol (30%, 50%, 70%, 90% and 100%) and embedded in pure Epon 812 resin. Sections (70 nm) from samples were stained with uranyl acetate and lead citrate. Imaging was performed at 100 kV using a Hitachi JEM-1400 PLUS transmission electron microscope (Japan Electron Optics Laboratory Co., Ltd). Digital images of the specimens were acquired using an EMSIS VELETA G3 CCD camera and analysed by experienced electron microscopists.
The study was conducted in accordance with the Declaration of Helsinki (as revised in 2013). This study was reviewed and approved by the Dongguan People’s Hospital Medical Ethics Board (approval #KYKT2020-005). All enrolled patients completed the informed consent form.
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4

Ultrastructural Analysis of Mouse Kidney and HK-2 Cells

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Freshly prepared kidney tissues of mice and HK-2 cells treated with drugs were immediately fixed for 2 hours in 2.5% glutaraldehyde in 0.1 M phosphate-buffered saline (pH = 7.4) and post-fixed in 1% OsO4, followed by washing in distilled water and en bloc staining in 3% uranyl acetate. Dehydration was conducted using a 70–100% graded ethanol. The tissues and HK-2 cells were then embedded, respectively, in Epon polymer and ultra-thin sections (70 nm) were obtained with a diamond knife on a Reichert Jung ultramicrotome (Leica, Germany), stained with uranyl acetate-lead citrate and observed with a JEM-1400plus transmission electron microscope (Japan Electron Optics Laboratory Co., Ltd., Japan). The TEM images with magnifications ranging from 5000× were analyzed for the examination of the morphology of subcellular constituents and structures, 20,000×were analyzed for the examination of the mitochondrial structure of HK-2 cells.
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Exosome Morphology Visualization via TEM

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For TEM analysis, exosomes were placed on copper and treated with phosphotungstic acid for negative staining. A JEM-1400PLUS transmission electron microscope (Japan Electron Optics Laboratory) was used to view the morphology of the exosomes.
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6

Liver Histopathological Assessment Protocol

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For light microscopic analysis, the liver was fixed in 10% neutral buffered formalin, embedded in paraffin, sectioned at 3 μm, and stained with hematoxylin and eosin. Additionally, the liver was cryoprotected overnight in 30% sucrose with 0.1 M phosphate buffer at room temperature, frozen in isopentane cooled with liquid nitrogen, sectioned at 8 μm by using a Leica CM3050S cryostat (Leica Microsystem, Wetzlar, Germany), and subjected to Oil Red O staining according to the standard procedures. The slides were examined by the study pathologist and the reviewing pathologist. The fatty change of hepatocyte was graded according to a grade scale of 0 to 4 on the basis of the degree of hepatocellular steatosis (< 5%, grade 0; 5%-25%, grade 1; > 25%-50%, grade 2; > 50%-75%, grade 3; > 75%, grade 4). One animal from each group was subjected to transmission electron microscopic examination. The liver was prefixed in a mixture of 2.5% glutaraldehyde and 2% paraformaldehyde for 2 hr and was postfixed in 1% osmium tetroxide for 2 hr. The fixed tissue was stained en bloc with uranyl acetate, dehydrated with increasing concentrations of acetone, embedded in epoxy resin, sectioned ultra-thinly by using an ultramicrotome, stained with lead citrate, and observed using a JEM-1400Plus transmission electron microscope (Japan Electron Optics Laboratory, Tokyo, Japan).
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7

Ultrastructural Analysis of Liver and Kidney

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The samples of the liver and kidney (right cortex) were obtained from 2 males and 2 females of the control and high dose groups after the dosing and recovery periods. The tissue samples obtained were pre-fixed in a mixture of 2.5 % glutaraldehyde and 2 % paraformaldehyde, post-fixed in 1 % osmium tetroxide, stained en bloc with uranyl acetate, dehydrated with a graded series of acetone, and embedded in epoxy resin. Depending on the histopathological findings, the livers (central zone) of the animals of the control and high dose groups were subjected to the transmission electron microscopy. In addition, the liver (intermediate zone) of the animal of the high dose group was subjected to transmission electron microscopy. The specimens embedded in epoxy resin were sectioned ultra-thinly using an ultramicrotome, stained with lead citrate, and observed with a JEM-1400Plus transmission electron microscope (JEOL, Japan). In the animals after completion of the recovery period, the transmission electron microscopy was not conducted in the liver because there was no test article-related abnormality in the liver at the end of the recovery period. For the kidney samples obtained at the end of the dosing and recovery periods, the transmission electron microscopy was not conducted because there was no test article-related abnormality in the kidney.
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8

Transmission Electron Microscopy of AG/PMO Complex

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The AG/PMO complex solution containing 1 μg of PMO was prepared at different weight ratios of AG/PMO in 100 μL 0.9% saline and analyzed using TEM (JEM-1400Plus transmission electron microscope, JEOL USA, Inc.) with an AMT-XR80S-B wide-angle side-mount 8-megapixel charge-coupled device (CCD) camera. The samples were prepared using negative staining with 1% phosphotungstic acid. Briefly, one drop of sample solution was placed on a formvar- and carbon-coated carbon grid (Electron Microscopy Sciences, Hatfield, PA, USA) for 1 h and blotted dry, followed by staining for 3 min. Samples were analyzed at 60 kV. Digital images were captured with a digital camera system from 4 pi Analysis (Durham, NC, USA).
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9

Ultrastructural Analysis of Cortical Capillaries

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Brain tissue was fixed with 4% paraformaldehyde and 2.5% glutaraldehyde (Electron Microscopy Sciences [EMS]), post fixed with 1% osmium tetroxide (Sigma-Aldrich), and dehydrated with increasing concentrations of ethanol, followed by propylene oxide (Sigma-Aldrich). For embedment, we used Agar 100 Resin (Agar Scientific). For imaging, we used 80 nm sections stained with 5% uranyl acetate for 10 min, followed by 10 min with lead citrate. Samples were visualized with a JEM-1400 Plus transmission electron microscope (Jeol) equipped with a Gatan CCD camera. For EM quantification, 15 cortical capillaries of each mouse, randomly selected, were analysed using the ImageJ software.
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10

Ultrastructure of Hippocampal CA1 Synapses

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The synaptic ultrastructure of the hippocampal CA1 region was observed by transmission electron microscopy. The left brain tissue was fixed in 4% glutaraldehyde for 24 h and cut into 1-mm dice. The samples were fixed in 1% osmium tetroxide for 1 h, washed in phosphate-buffered saline (PBS) twice, dehydrated in a graded series of acetone, and then embedded in Epon-812 reagent. The ultrathin sections were cut into 50 nm thick slices and desiccated. Then the sections were stained with uranyl acetate (Ted Pella Inc., CA, United States) and lead citrate (Beijing Zhongjingkeyi Technology Company, Beijing, China) for 10 min at room temperature. After rinsing and drying, the synaptic ultrastructure of the hippocampal CA1 region was observed under JEM-1400 plus transmission electron microscope (JEOL, Japan).
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