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Cytation 3 imaging reader

Manufactured by Agilent Technologies
Sourced in United States, Switzerland

The Cytation 3 is a multi-mode microplate reader that combines automated digital microscopy with conventional absorbance, fluorescence, and luminescence detection. It is designed to perform a wide range of cell-based and molecular assays.

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151 protocols using cytation 3 imaging reader

1

Fluorometric and Colorimetric Enzyme Activity Assays

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4MU substrate assays were performed as previously described (25 (link)). Substrates were used at a final concentration of 10 μM. Enzymes were used at a 150 nM final concentration for the experiments represented in Fig. 1A. Enzymes were used at a final concentration of 50 nM for the experiments represented in Fig. S1B in the supplemental material. Fluorescence (λex = 365 nm and λem = 455 nm) was measured every minute on a Cytation 3 imaging reader (BioTek, Winooski, VT, USA) for 60 min.
4-Nitrophenol acetate (4NPA) and 4-nitrophenol thiol-acetate (4-S-NPA) assays were performed as previously described for 4-nitrophenol octanoate (4NPO) (12 (link)). Enzymes were used at a final concentration of 150 nM. Absorbance was monitored on a Cytation 3 imaging reader (BioTek, Winooski, VT, USA).
QStE assays were performed as previously described. In short, a 10 μM final concentration of QstE substrate was incubated with 150 nM enzyme in reaction buffer (20 mM HEPES [pH 7.4], 150 mM NaCl, 10 mM CHAPS {3-[(3-cholamidopropyl)-dimethylammonio]-1-propanesulfonate}) at 37°C. Fluorescence (λex = 410 nm and λem = 450 nm) was monitored every minute for 1 h on a Cytation 3 imaging reader (BioTek, Winooski, VT, USA).
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2

Immunofluorescence Staining of Actin and Nuclei

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Immunofluorescence staining was performed on cells cultured in 24‐well plates fixated on 12‐mm round glasses using cytoskeleton F‐actin and nuclear DAPI staining. Briefly, cells were fixed with 2% formaldehyde for 10 minutes at RT, washed twice with PBS, and permeabilized with 0.1% Triton‐X in PBS for 15 minutes. Blocking of unspecific binding sites was done with 1% BSA solution for 20 minutes, and cells were stained for F‐actin with Phalloidin Flash‐488 (424201, Biolegend, San Diego, CA, USA) for 1h at room temperature (RT). Glasses were washed twice with PBS, and stained for the nucleus with DAPI (A4099,0005, PanReac AppliChem, Darmstadt, Germany) and submerged in PBS. Fluorescence images were obtained using the BioTek Cytation 3 imaging reader with corresponding Gen5 Image software version 3.04. Imaging was performed with bright field or with the DAPI, GFP, and Texas Red filter cubes using the 4x and 10x objectives. Images were obtained using the BioTek Cytation 3 imaging reader with corresponding Gen5 Image software version 3.04. Imaging was performed with bright field or with the DAPI, GFP and Texas Red filter cubes using the 4x and 10x objectives.
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3

Cytotoxicity Assay of AcE on LPS-Stimulated Cells

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Cells were grown in 96-well plates with Pg LPS and E. coli LPS-stimulation in the presence and absence of AcE (10–1000 μg/mL). DMSO (50%) was used for positive control. Resazurin reduction assays (Alamar blue) (Invitrogen, DAL 1025) were performed after 5 days. The cultures were placed in medium containing 10% of Alamar blue. After 4 h of incubation, 100 μL of the medium was transferred to the wells of a 96-well plate and the optical density (OD) was measured using Cytation 3, Imaging reader (Biotek, USA) at wavelengths of 570 and 600 nm. The percentage of cells showing cytotoxicity relative to the control group (Ctrl) was determined. A greater percentage of reduction on Alamar blue assay reflects greater cell proliferation. Additionally, protein assays were used to evaluate cell proliferation. Cell lysis was carried out as listed in Kartner et al., 2010 [13 (link)]. Cells were briefly washed with PBS and lysed with protein lysis buffer (90 mM trisodium citrate, 10 mM NaCl, 0.1% Triton X-100, pH 4.8). Protein concentrations were determined using the Pierce BCA protein assay (Thermo Scientific 23225). The OD was measured using Cytation 3, Imaging reader (Biotek, USA) at 562 nm wavelengths that provided the formula to calculated the protein levels.
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4

Fluorescence-based Enzyme Activity Assays

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4MU substrate assays were performed as previously described (Foe et al., 2018 ). Substrates were used at a final concentration of 10 μM. Enzymes were used at a 50nM final concentration for the experiments represented in Fig. 1A. Enzymes were used at a final concentration of 50 nM for the experiments represented in Fig. S1B in the supplemental material. Fluorescence (Ex = 335 nm and Em = 450 nm) was measured every minute on a Cytation 3 imaging reader (BioTek, Winooski, VT, USA) for 60 min. 4-Nitrophenol acetate (4NPA) and 4-nitrophenol thiol-acetate (4-S-NPA) assays were performed as previously described for 4-nitrophenol octanoate (4NPO) (Foe et al., 2018 ) . Enzymes were used at a final concentration of 150 nM. Absorbance was monitored on a Cytation 3 imaging reader (BioTek, Winooski, VT, USA).
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5

Nuclei Staining and Cell Viability Assays

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Cells were xed with cold 100% methanol for 15 minutes. The nuclei were then stained with DAPI (Roche Diagnostics, Basel, Switzerland; 10236276001) and counted on the Cytation3 Imaging Reader (BioTek, Winooski, VT).
MTT [3-(4,5-Dimethylthiazol-2-yl)-2,5-Diphenyltetrazolium Bromide] assay MTT assay (Trevigen; 4890-25-K) was performed according to manufacturer's instructions. Cell viability was quanti ed as the optical density (OD) read at wavelengths 540 nm and 650 nm. The nal OD was calculated as follows: OD 540 nm -OD 640 nm. OD was measured using the Cytation3 Imaging Reader (BioTek, Winooski, VT).
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6

PKA Activation Monitoring in Cells

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Cells were seeded at 200,000 cells per well of a six-well plate and transiently transfected with 1 μg of pPKA-SPARK using the PEI MAX 40K transfection reagent. Twenty-four hours after transfection, cells were treated with FI for specified time points. Fluorescence imaging and image analysis were done on live cells using the Cytation 3 Imaging Reader (Agilent) the software Gen5.
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7

Quantifying Cellular ATP Levels

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ATP levels were measured with the CellTiter-Glo (CTG) luminescent assay (Promega, no. G7572) according to the manufacturer’s instructions. Briefly, cells were seeded at a density of 70,000 cells per well of 96-well plates. After 24 hours, CTG reagent was added, and the luminescence was measured with the Cytation 3 Imaging Reader from Agilent. The luminescence of control cells was set to 1.
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8

cAMP Quantification using Luminescence

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cAMP was measured using a cAMP-Glo assay kit (Promega, no. V1501) according to the manufacturer’s protocol. Briefly, cells were seeded at a density of 3000 cells per well of a white opaque 384-well plate with a clear bottom (Corning, no. 3765). After 24 hours, medium was replaced by serum-free medium containing FI and incubated for 30 min, 1 hour, 3 hours, and 6 hours. Cells were lysed using the cAMP-Glo lysis buffer by shaking at room temperature for 15 to 30 min. cAMP detection solution containing the enzyme PKA was added, mixed, and incubated for 20 min at room temperature. Then, the Kinase-Glo reagent was added, mixed, and incubated for 10 min at room temperature. Luminescence was measured using the Cytation 3 Imaging Reader from Agilent.
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9

Effects of Anti-Estrogen and Nucleoside Treatments on Cell Viability

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Cells were seeded into a 96-well plate 24 hours before drug treatments. A serial dilution ranging from 10−9 to 10−4 M for 4-OHT or MRT in DMEM medium without phenol red, containing 5% CHFBS, penicillin/streptomycin, l-glutamine, and E2 (5 pM), was prepared and added to the cells. For the combination of 4-OHT + MRT, 50 nM or 120 nM MRT was added to the serial dilutions of 4-OHT. For the combination of 4-OHT and purine nucleosides, purine-depleted serum was charcoal-treated for the additional depletion of hormones. After 7 days of 4-OHT, 4-OHT + MRT, or 4-OHT + nucleoside (5 μM each) treatments or 3 days of MRT monotherapy, cells were stained using crystal violet, and absorbance was measured at 595 nm using the Cytation 3 Imaging Reader (Agilent). Dose-response curves were fitted by least squares regression with a variable slope (four parameters) using GraphPad Prism version 8.0.0. IC10, IC20, and IC50 values were obtained by interpolating the curves with a 95% confidence interval.
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10

Quantification of IL-6 Induced Endothelial Cell Growth

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HUVECs were seeded in 24-well plates (2 × 105 cells per well) containing 0.5 mL complete endothelial medium with antibiotics, and were incubated overnight. The next day, 1 plate was fixed and stained to be used as the number of cells at baseline (time = 0 h). For the other plates (time = 24 h to 168 h), the medium was replaced every 72 h with antibiotic-free complete endothelial medium, and the cells were stimulated with IL-6 alone or in combination with sIL-6R. At the end of the incubation periods, the cells were fixed and stained with crystal violet solution. Briefly, the medium was removed and 500 µL of a solution containing 0.1% crystal violet in 20% methanol was added into each well, and the plate was then incubated on a shaker (200 cycles/min) for 20 min at room temperature. Then, the wells were washed 5 times using deionized water and were allowed to air-dry for 24 h. By adding 250 µL of 10% acetic acid solution and shaking the plate for 5 min, the dye retained by the cells was solubilized, and the optical density (OD) in the supernatant was measured at 590 nm using Cytation 3 Imaging reader (BioTek, Winooski, USA). The OD at time = 0 h was set to 1 and a ratio was calculated on the basis of the OD from time = 24 h to 168 h divided by the OD from time = 0 h.
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