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26 protocols using bca assay kit

1

Western Blot Analysis of PTP4A1 Protein

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The total proteins of tissues or cells were collected using RIPA buffer supplemented with 1 mM PMSF and protease inhibitor cocktail (Sigma-Aldrich, St Louis, USA). The protein concentrations were determined using the BCA assay kit (Abcam, Shanghai, China) and the protein samples were separated by 10% SDS-PAGE and transferred to PVDF membranes (Roche, Indianapolis, USA). After being blocked the membranes were incubated with the indicated primary antibodies: anti-PTP4A1 antibody (1:600, 11508-1-AP; Proteintech, Chicago, USA) and anti-GAPDH antibody (1:5000, ab8245; Abcam) at 4°C overnight. After extensive wash, the membranes were incubated with the corresponding secondary antibody (1:5000, ab6721; Abcam) for 1 h at room temperature. The protein bands were visualized using Pierce enhanced chemiluminescence (ECL) kit (Thermo Fisher Scientific, Waltham, USA).
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2

Quantitative Western Blot Analysis of KPNA2

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The harvested cells were processed in radioimmunoprecipitation assay buffer. The obtained cell homogenate was centrifuged to separate the total protein from the cellular pellet. The concentration of the obtained protein sample was measured using a BCA assay kit (Abcam, USA). Then, aliquots containing equal amounts of protein were separated by 10% SDS-PAGE. After electrophoresis, proteins were transferred to polyvinylidene fluoride (PVDF) membranes for 90 min at 30 V. Membranes were blocked with blocking buffer, and incubated with anti-KPNA2 antibody (1:1000, cat#: 10819-1-AP, Proteintech, USA) and anti-GAPDH (1:1000, cat#:60004-1-Ig; Proteintech, USA) overnight at 4 °C with agitation after the membranes were blocked with blocking buffer. The membrane was incubated with horseradish peroxidase (HRP)-conjugated secondary antibody (1:1000, cat: H10007, ThermoFisher, USA) for 1 h at room temperature. The protein bands were detected using an ECL system (ChemiDoc Imaging system; Bio-Rad).
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3

Protein Extraction and Western Blot Analysis in GBM

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The GBM tissues or GBM cells were added with RIPA buffer (Beyotime, Shanghai, China) containing protease inhibitors. The concentration of aboveextracted proteins was assessed with a BCA assay kit (Abcam, Cambridge, UK). The equal amount of protein samples (30 μg) was separated by 10% SDS‐PAGE and then transferred into the PVDF membranes (Invitrogen). The primary antibodies including anti‐YTHDF2 (ab220163, Abcam), anti‐EPHB3 (ab133742, Abcam), anti‐TNFAIP3 (ab92324, Abcam), anti‐pAkt (Ser473, #3787, Cell Signaling technology, Bossdun, USA), anti‐Akt (#2938, Cell Signaling), anti‐p65 (ab32536, Abcam), anti‐LaminB (sc‐374015, Santa Cruz Biotechnology, CA, USA) and β‐actin (ab8227, Abcam) were incubated with the PVDF membranes for overnight at 4°C. The samples were next incubated with the goat anti‐rabbit IgG (ab205718, Abcam) at 37°C for 2 h at room temperature.
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4

Western Blot Analysis of Extracellular Vesicle Markers

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The Western blot was conducted following routine procedures, as described previously (20 (link)). Briefly, proteins were extracted using radioimmunoprecipitation buffer containing protease inhibitor cocktail (Abcam). Protein concentration was measured by BCA assay kit (Abcam). The 20 µg of protein were loaded on SDS-PAGE gel and then subjected to transfer. The primary antibodies used in the study included: anti-CD63 (1:1,000; Abcam), anti-β actin (1:2,000; Abcam), anti-CD9 (1:1,000; Abcam), anti-Alix (1:1,000; Abcam), anti-TLR4 (1:1,000; Abcam), anti-phospho-p65 (1:1,000; Abcam), anti-p65 (1:1,000; Abcam).
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5

Osteosarcoma Protein Expression Analysis

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Total proteins were extracted from osteosarcoma/normal tissues and cells, and the protein concentration was determined with a BCA Assay kit (Abcam, Cambridge, MA, USA). Then, 40 µg proteins were loaded onto a 10% SDS-PAGE and transferred onto a polyvinylidene fluoride membrane. After blocked with 5% skim milk, the membrane was incubated with primary antibodies separately, HOXA5 (1 µg/ml; Abcam), Bcl-2(1:2000; Abcam), Bax (1:10000; Abcam), Cleaved caspase-3(1:1000; Abcam) and P38 (1:1000; Abcam) at 4°C overnight. After washing with TBST, the membrane was incubated with horseradish peroxidase-conjugated anti-rabbit immunoglobulin G at 25 °C for 1 h. The relative expression of target proteins was normalized to the GAPDH expression.
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6

Western Blot Analysis of SRGN Protein

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Total proteins were isolated from plasma samples and cells using RIPA reagent (Sigma‐Aldrich, USA), and the protein concentrations were determined by a Bicinchoninic Acid Protein (BCA) Assay Kit (Abcam, Shanghai, China). 20 μg proteins were separated by 10% SDS‐PAGE (Thermo Fisher Scientific Inc, Waltham, MA, USA) and transferred to a polyvinylidene difluoride (PVDF; Sigma‐Aldrich, USA) membrane. The membrane was then blocked by 5% non‐fat milk for 1 h at about 25°C and incubated with primary antibodies: rabbit anti‐SRGN (1:1000, ab156991; Abcam, Shanghai, China) and β‐actin (1:1000, ab8227; Abcam, Shanghai, China) at 4°C overnight. Afterward, the membrane was washed with PBS (0.1% Tween‐20) three times and then incubated with IgG H&L (HRP) secondary antibody (1:1000, ab7090; Abcam, Shanghai, China) at room temperature for 2 h. β‐actin functioned as an internal control. ImageJ version 1.46 software (National Institutes of Health, Bethesda, MD, USA) was applied to quantify the band intensity, and relative SRGN protein expression was normalized to the band intensity of β‐actin.
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7

Western Blot Analysis of Apoptosis Markers

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Protein was extracted from cells on ice with precooled RIPA lysis buffer (contains protease inhibitors; Beyotime Biotechnology) for 10 min, and then quantified using a BCA assay kit (Abcam, Shanghai, China). Protein samples (30 µg/lane) were separated by 10% SDS-PAGE at 120 V and transferred to PVDF membranes (Millipore, Thermo Fisher Scientific) at 280 mV for 90 min. The membranes were first blocked with 5% skimmed milk for 2 h at room temperature. Afterward, they were incubated with diluted primary antibodies against CTRP6 (ab36898; 1:500), PPARγ (ab178860; 1:1,000), Bcl2 (ab32124; 1:1,000), Bax (ab32503; 1:1,000), Cleaved caspase3 (ab32042; 1:500) and GAPDH (ab181602; 1:10,000) at 4°C overnight followed by HRP-conjugated goat anti-rabbit IgG secondary antibody (ab6721; 1:10,000; all Abcam) at room temperature for 1 h. The chemiluminescence reaction was performed using an ECL kit (Yeasen BioTechnology, Shanghai, China), and densitometry was analyzed using the ImageJ software (v1.8; National Institutes of Health) [23 (link)].
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8

Protein Expression Analysis by Western Blot

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The protein of each group was collected after cell lysis with RIPA buffer and quantified using a BCA assay kit from Abcam (Cambridge, MA, USA). 20 µg of protein was separated on 10% SDS-PAGE gel, electrotransferred to nitrocellulose membranes (Thermo Fisher, USA), blocked with 1% BSA for 1 h and incubated with rabbit primary antibodies in 1:1000 dilution, including anti-Ang-2(#2948S), anti-FOXC2(#12974S),anti-E-cadherin(#14472S), anti-vimentin(#5741S), anti-fibronectin(#4705S) and anti-β-actin(#4970S) (Cell Signaling Technologies,USA). Subsequently, the membranes were washed extensively with PBST (Tween-20, 0.1%) followed by incubation of secondary antibody, HRP-conjugated anti-rabbit IgG incubation for 1 h at room temperature. The ECL method was then used to visualize protein bands.
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9

Protein Extraction and Western Blot Analysis

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The cells of each treatment group were collected and protein was extracted on ice with precooled RIPA lysis buffer (Beyotime Institute of Biotechnology) for 10 min. Protein was quantified using a BCA assay kit (Abcam) and the same amount of protein (25 µg/lane) was separated by 12% SDS-PAGE. Subsequently, the proteins were transferred to nitrocellulose membranes at 60 V for 120 min. The membranes were first blocked with 5% skimmed milk for 2 h at room temperature. The membranes were then incubated with primary antibodies at 4˚C overnight followed by HRP-conjugated goat anti-rabbit IgG secondary antibody at room temperature for 120 min. Finally, the chemiluminescence reaction was performed using an ECL kit (Beijing Solarbio Science & Technology Co., Ltd.), and images were captured to observe the blots. The densitometry was analyzed using the ImageJ software (v1.8; National Institutes of Health). Detailed information on the antibodies is shown in Table II. The experiment was repeated in triplicate.
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10

Quantitative Protein Analysis of Fibroblasts

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Fibroblasts were lysed using pre-chilled lysis buffer at 4℃. The BCA assay kit (Abcam, USA) was employed to quantify the total protein content in each sample. Measured aliquots of 30 µg total protein per sample were subjected to electrophoresis on a 4-20% gradient SDS-PAGE gel and transferred onto PVDF membranes. Membranes were blocked using a solution of 5% skim milk in TBS-T and incubated with primary antibodies, all from Abcam, against KLF5 (1:200), Runt-related transcription factor 2 (RUNX2, 1:1000), osteocalcin (OCN, 1:1000), osteopontin (OPN, 1:1000), CX43 (1:1000), and β-actin (1:200) at 4℃ overnight. Following primary antibody incubation, membranes were treated with peroxidase-conjugated anti-rabbit IgG secondary antibody (1:5000, Millipore Corporation). Enhanced chemiluminescence reagent (Merck Millipore, Billerica, MA, USA) and a chemiluminescence imaging system (Bio-Rad Laboratories, Inc) were used for visualization. Protein bands were quantified using ImageJ software version 1.52 (National Institutes of Health, USA), with β-actin as the loading control.
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