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21 protocols using abt 737

1

Cell Viability and Apoptosis Assay

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SU9516 (Calbiochem), (3-(4,5-dimethylthiazol-2-yl)-2,5diphenyltetrazolium bromide (MTT), sodium dodecylsulphate (SDS) were from Sigma Aldrich, ABT-737 was from Abbott Laboratories. In this study were used rabbit polyclonal antibodies against Mcl-1 (SAB4501843) from Sigma-Aldrich, Bcl-X L (sc-7195), BIM (sc-11425) and BAX (sc-439). Mouse monoclonal antibodies against p53 (SC-5576) and β-actin (SC-47778); mouse anti-rabbit (SC-2357) and goat anti-mouse (SC-2005) were from Santa Cruz Biotechnology, secondary antibodies conjugated with horseradish peroxidase.
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2

Examining Apoptosis-Regulating Proteins in MEFs

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All cell culture and transfection reagents were from Invitrogen; and standard reagents were from Sigma or Fisher Scientific unless indicated. Drugs were from: ABT-737 (Abbott Pharmaceuticals), Hoechst 33342 (Anaspec); and β-ME, Cisplatin, DTT, JC-1, mDIVI-1, Paclitaxel, Tg, TMRE, and Tun (Sigma). Antibodies (clone): anti-actin (C4), anti-BCL-2 (100), anti-MCL-1 (Rockland), anti-BIM (22-40), anti-PUMA (CT; Sigma), anti-cytochrome c (7H8.2C12), anti-BAK (NT), anti-BAX (clone 6A7 for IP; clone N20 for western blot; clone Δ21 for trypsin studies), anti-BCL-xL (S18), anti-GAPDH (9B3), anti-Mfn1 (ABCAM, 57602), anti-Mfn2 (ABCAM, 56889), anti-HSP60 (B-9). BAX, BAXΔC, BAXS184A, BCL-xLΔC, N/C-BID, BIM-S were made as described (Chipuk et al., 2008 (link); Suzuki et al., 2000 (link); von Ahsen et al., 2000 (link)). The human BIM and PUMA BH3 domain peptides (Abgent) were resuspended in anhydrous DMSO. Knockout and Wt matched MEFs: Bak−/−, Bax−/−, Bak−/−Bax−/−, Bid−/−, Bid−/−Bim−/−, Puma−/−, Mfn1−/− and Mfn2−/− were obtained from Drs. Stanley Korsmeyer (Wei et al., 2001 (link)), Doug Green (Chipuk et al., 2008 (link)), Gerald Zambetti (Jeffers et al., 2003 (link)), and ATCC (Chen et al., 2003 (link)).
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3

Cell Line Maintenance and Compound Preparation

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SCLC cell lines were purchased from American Type Culture Collection and maintained as recommended. All cell lines tested negative for mycoplasma (Lonza; MycoAlert) and were short tandem repeat verified at the Johns Hopkins Fragment Analysis Facility within 6 months of use. ABT-737 was obtained from Abbott Laboratories (now Abbvie) and purchased from Active Biochem (A-1002). For in vivo use, ABT-737 and etoposide (Accord Healthcare, Inc.) were prepared as previously described (18 (link)). Rapamycin (LC Laboratories) was stored in 100% ethanol at 50 mg/mL. For in vivo use, Rapamycin vehicle was 82% PBS/5% Tween-80/5% polyethylene glycol 400/8% ethanol. AZD8055 (S1555), BEZ235 (S1009), everolimus (S1120), LY294002 (S1105), and wortmannin (S2758) were purchased from Selleck Chemicals. Dimethyl sulfoxide (DMSO) was used as a vehicle for all in vitro experiments.
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4

Adoptive T-cell transfer and LCMV infection

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Uninfected C57BL/6 mice received 5000 CD8+ T cells, isolated from CD45.1+ P14-Bim-mCherry mice with CD8a+ T-Cell Isolation Kit (Miltenyi Biotec Inc.), through intravenous (i.v.) adoptive transfer and were infected with LCMV one day later. On day 10 post-infection, splenic CD8+ T cells were enriched with CD8a+ T-Cell Isolation Kit. Bim-mCherry cells, P14-Bim-mCherry cells, or Nur77-GFP cells were further sorted on BD FACSAria II (BD Biosciences) with the assistance of the Research Flow Cytometry Core at CCHMC. One million of sorted CD8+ T cells were i.v. adoptive transferred into timed-infected congenic recipients. After 14 days, the lymphocytes in spleen were analyzed by flow cytometry. ABT-737 was a generous gift from Abbott Laboratories [65 (link)] and given to mice as previously described [15 (link), 22 (link), 66 (link)], 1 mg/mouse/day between days 14 and 23 post-infection.
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5

Apoptotic Signaling Pathway Analysis

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All cell culture and transfection reagents were from Invitrogen; and standard reagents were from Sigma or Fisher Scientific. Drugs were from: ABT-737 (Abbott Pharmaceuticals), ABT-263/PLX-4032/GSK-110212 (Selleck), zVAD-fmk (Calbiochem), Hoechst 33342 (Anaspec), and staurosporine/cisplatin/dacarbazine/vinblastine (Sigma). Antibodies (clone): anti-actin (C4), anti-A1 (FL-175), anti-BCL-2 (100), anti-CD31 (BD Pharmingen #550274) anti-MCL-1 (Rockland), anti-BAD (C7), anti-BIM (22 (link)–40), anti-PUMA (CT; Sigma), anti-SMAC (H177), anti-BID (C20), anti-cytochrome c (7H8.2C12), anti-BAK (G23), anti-BAX (6A7 for IP; N20 for western blot), anti-BCL-xL (H5 for IP; S18 for western blot), anti-GAPDH (9B3), anti-HSP60 (B-9), anti-p44/p42 MAPK ERK1/2 (137F5), and anti-phospho p44/42 MAPK ERK1/2 (197G2). Caspase-8 cleaved mouse BID (C8-BID) was from R&D Systems. Full-length BAX was made as described (24 (link)). Human BCL-xLΔC, MCL-1ΔC, and PUMAβ were made as described (17 (link)). The human BIM BH3 domain peptide (> 98% purity, Abgent) was resuspended in anhydrous DMSO in a N2 environment, stored at −80°C, and thawed only once. All lipids for the LUVs studies were purchased from Avanti Polar Lipids. Statistical significance was evaluated by two tailed Student t test for p < 0.05.
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6

Apoptotic Signaling Pathway Analysis

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All cell culture and transfection reagents were from Invitrogen; and standard reagents were from Sigma or Fisher Scientific. Drugs were from: ABT-737 (Abbott Pharmaceuticals), ABT-263/PLX-4032/GSK-110212 (Selleck), zVAD-fmk (Calbiochem), Hoechst 33342 (Anaspec), and staurosporine/cisplatin/dacarbazine/vinblastine (Sigma). Antibodies (clone): anti-actin (C4), anti-A1 (FL-175), anti-BCL-2 (100), anti-CD31 (BD Pharmingen #550274) anti-MCL-1 (Rockland), anti-BAD (C7), anti-BIM (22 (link)–40), anti-PUMA (CT; Sigma), anti-SMAC (H177), anti-BID (C20), anti-cytochrome c (7H8.2C12), anti-BAK (G23), anti-BAX (6A7 for IP; N20 for western blot), anti-BCL-xL (H5 for IP; S18 for western blot), anti-GAPDH (9B3), anti-HSP60 (B-9), anti-p44/p42 MAPK ERK1/2 (137F5), and anti-phospho p44/42 MAPK ERK1/2 (197G2). Caspase-8 cleaved mouse BID (C8-BID) was from R&D Systems. Full-length BAX was made as described (24 (link)). Human BCL-xLΔC, MCL-1ΔC, and PUMAβ were made as described (17 (link)). The human BIM BH3 domain peptide (> 98% purity, Abgent) was resuspended in anhydrous DMSO in a N2 environment, stored at −80°C, and thawed only once. All lipids for the LUVs studies were purchased from Avanti Polar Lipids. Statistical significance was evaluated by two tailed Student t test for p < 0.05.
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7

Apoptosis Induction by ABT-737 in Cells

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ABT-737 was supplied by Abbott Laboratories (Abbott Park, IL). 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) and anti-α-tubulin antibodies were purchased from Sigma-Aldrich Chemical Co. (St. Louis, MO). FITC Annexin V Apoptotic Detection Kit II was from BD Bioscience (San Jose, CA). All cell culture media and other products were purchased from Invitrogen Corporation (Carlsbad, CA). MG132 was from Cayman Chemical (Ann Arbor, MI). Chemiluminescence Western blot reagents were obtained from Pierce Biotechnology, Inc. (Rockford, IL). The following antibodies were used in this study: anti-cleaved poly(ADP-ribose) polymerase (PARP) antibody, anti-Mcl-1 (Cell Signaling Technology® Inc., Beverly, MA), anti-BAK antibody (Lab Vision™, Fremont, CA).
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8

NCI Diversity Set Compound Preparation

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The
NCI Diversity Set of compounds was obtained
from the National Cancer Institute, National Health Developmental
Therapeutics Program (Bethesda, MD). Etoposide was purchased from
Sigma-Aldrich (St. Louis, MO). Abbott Laboratories (Abbott Park, IL)
kindly provided ABT-737. All compounds were dissolved in 100% DMSO
to obtain a 10 mM stock concentration based on the molecular weight
of each compound.
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9

Chemotherapeutic agents and immunotherapy

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ABT-737: The mice were treated with either 100 mg/kg/d ABT-737 solution or an equal volume of carrier solution administrated via intraperitoneal injections (i.p.) for 21 consecutive days. ABT-737 was received from Abbott (now AbbVie Inc). After the treatment the mice were followed up for 21 days. Navitoclax, venetoclax, metformin: The mice were treated with vehicle (5% EtOH, 20% Phosal PG in MQ), 100 mg/kg/d Navitoclax or venetoclax, 300 or 600 g/kg/d metformin or with drug combinations delivered via intragastric (i.g.) route for 21 days. The cohorts were followed up until 60 days after transplantation. Navitoclax and venetoclax were from AbbVie Inc. Drugs were sonicated daily for better solubility. In the experiments including anti-PD-1, mice received i.p. injections of either 200 µg control IgG (bxcell, #BE0089) or 200 µg anti-PD-1 (bxcell, #BE0146) every third day, in total four times, together with the 1-week daily adjuvant i.g. treatments of either vehicle, venetoclax, metformin or the combination of venetoclax+metformin. Paclitaxel was administrated every third day, i.p., 10 mg/kg in cremphor EL-ethanol-saline. Plasma ALAT levels were measured in the Biochemical Analysis Core for Experimental Research, University of Helsinki.
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10

Akt Pathway Inhibition Evaluations

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ABT‐737, negative control enantiomer, and A‐443654 were obtained from Abbott Laboratories. MK‐2206 and LY294002 were purchased from Selleck Chemicals. Deguelin was obtained from Tocris Bioscience, Minneapolis. Recombinant Human Active Akt1 was obtained from R&D Systems (1775‐KS) and Sigma (A8729).
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