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8 protocols using ab1827

1

Extracellular Matrix Regulation Assay

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All the reagents used in this study were supplied by ThermoScientific USA (Waltham, MA, USA) unless otherwise stated. Antibodies against TIMP-1 (Abcam: Ab1827) (Cambridge, MA, USA), MT1-MMP (Abcam: Ab38970), fibronectin (R&D Systems: MAB 19181) (Minneapolis, MN, USA), collagen I (Abcam: Ab34710) and laminin (Abcam: Ab11575) were purchased either from R&D Systems or Abcam, USA. Senescence detection kit and Matrigel® were products from Biovision (San Francisco, CA, USA) and BD Biosciences (San Jose, CA, USA). HT1080 and CaKi-1 cell lines were acquired from the Shanghai Cell Repository, Chinese Academy of Science (Shanghai, China).
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2

Immunofluorescence Staining of THP-1 Cells

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THP-1 cells were seeded on glass coverslips in bottom chamber 4-well slides (ibidi) and incubated with poly-L-lysin (Sigma Aldrich, Deisenhofen, Germany) for 1 h. Then, the cells were fixed with 4% paraformaldehyde (PFA) (ThermoFisher Scientific) for 15 min, permeabilized with 0.1% Triton X-100 in PBS/BSA 1% blocking buffer (Cell Signaling Technology, Danvers, MA, USA) for 30 min at RT, and incubated overnight at 4 °C with primary antibodies against CD74 (AF7478) (R&D, Minneapolis, MN, USA) and TIMP-1 (ab1827) (Abcam, Cambridge, Great Britain). Non-specific isotype antibodies were used as negative controls. Species-specific Star488/Star635 secondary fluorescence antibodies (Abberior, Goettingen, Germany) were applied for 2 h at RT. The slides were embedded in Prolong® Diamond antifade mountant (ThermoFisher Scientific) in the presence of 4′,6-diamidino-2-phenylindole (DAPI) to counterstain the nuclei. Digital images were acquired using a Leica DMi8 fluorescence microscope equipped with a digital camera (Leica Microsystems).
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3

Quantifying Dermal Fibroblast Proteases

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Briefly, 5 × 104 dermal fibroblasts were lysed using Laemmli sample buffer (S3401, Sigma) and subsequently 15 µl of total cell lysates were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), and transferred onto a nitrocellulose membrane. To detect protein expression, antibodies against MMP-1 (ab38929, Abcam), TIMP-1 (ab1827, Abcam), GAPDH (ab9484, Abcam) and secondary HRP- conjugated (Dako) antibodies were used. TIMP-1 and MMP-1 (both R&D Systems) protein concentration in culture supernatants were measured by ELISA according to the manufacturer's protocol. Signal development was performed using HRP/Streptavidin and the OPD substrate (Sigma-Aldrich) at room temperature. Fluorescence was measured using a plate reader (Tecan, Sunrise). Samples were run in duplicate, and serial dilution was performed in order to obtain concentrations that fell within the detection limits of the assay (0–80 ng/ml).
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4

Osteoclast Differentiation and Function

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Unless otherwise stated, all the chemicals and reagents used in this study were supplied by Thermo Fisher Scientific (USA). Antibodies for TIMP-1 (Ab1827), TACE (Ab28233), TRAP (Ab191406), CatK (11239 to 1-AP), and NFATc1 (66963 to 1-Ig) were acquired from Abcam (UK), Proteintech (USA), or Novus Biologicals (USA). Osteoclast Identification kit (70-CK20203), TRAP activity test kit (P0332), F-actin staining kit (C2203-S, Actin-Tracker Red-555), RNeasy Mini Kit (74004), GoScript Reverse Transcription System kit (A5001), and GoTaq qPCR Master Mix kit (A6020) were sourced from MultiSciences (China), Beyotime (China), Qiagen (Germany), and Promega (USA). Enzyme-linked immunosorbent assay (ELISA) kit for TNF-α (10602) was the product of Sino Biological (China). Batimastat (BB-94; S7155), ilomastat (galardin, GM6001; S7157), and TNF-α processing inhibitor (TAPI-0; CAS143457-40-3) were the products of Selleckchem (USA) and Santa Cruz Biotechnology (USA), respectively. Bovine cortical dentin slices (0.2 mm) were purchased from Boneslices (Denmark).
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5

Immunofluorescence Visualization of Extracellular Matrix Regulators

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Cells on slides were fixed in 4% paraformaldehyde/PBS for 30 minutes and rinsed with PBS. After permeabilization with 0.1% Triton X-100/PBS for 10 minutes, the slides were blocked in 3% BSA for 30 minutes. The slides were then incubated with the primary antibodies (anti-MMP1, Catalogue number ab52631, Abcam, 1:100 dilution; anti-TIMP1, ab1827, Abcam, 1:100 dilution; anti-TGFB1, BA0290, Boster, 1:50 dilution; anti-TGFB2, BA0292, Boster, 1:50 dilution; 100μl each) for 2 hours at room temperature. After washing with PBS three times, the slides were incubated with Fluorescein isocyanate (FITC)-conjugated anti-rabbit antibody at room temperature for 1 hour. After mounting (UltraCruz Mounting Medium, SC-24941; Santa Cruz Biotechnology, Inc., USA), the slides were subjected to image acquisitions under a laser scanning microscope (Leica TCS SP5, Leica Microsystems, Exton, PA). The images were then analyzed using the Image-Pro Plus 6.0 (IPP 6.0) software (Media Cybernetics, USA).
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6

Neuronal Differentiation Assay Protocol

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The neuronal differentiation assay was performed following our previous work (4 (link)). Briefly, cells were seeded into 24- or 6-well plates at a density of 1×104 or 2×105 cells/well with neurogenic medium consisting of 10% FBS (GE Healthcare Life Sciences), 2% B27 (Gibco; Thermo Fisher Scientific, Inc.), 1 µg/ml ATRA (Merck KGaA), 50 ng/ml sonic hedgehog (PeproTech, Inc.) and 50 ng/ml NT-3 (PeproTech, Inc.) and placed at 37°C in a humidified incubator containing 5% CO2 for two weeks; the medium was replaced every three days. These differentiated cells were fixed with 4% PFA for immunofluorescence staining at 4°C for 12 h, digested using a 0.25% trypsin solution, and washed several times with PBS according to the aforementioned protocol. The primary antibodies were purchased from Chemicon International; Thermo Fisher Scientific, Inc. and comprised of mouse anti-β III Tubulin (Tuj-1; rabbit polyclonal; cat. no. ab1827; Abcam; 1:300), mouse anti-growth associated protein-43 (GAP-43; rabbit polyclonal; cat. no. ab16053; Abcam; 1:300), mouse anti-microtubule-associated protein 2 (MAP2; mouse monoclonal; cat. no. ab11267; Abcam; 1:300) and mouse anti-actin (mouse monoclonal; cat. no. BM5422; Wuhan Boster Biological Technology, Ltd.; 1:400).
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7

TIMP-1 and MMP-1 Protein Analysis

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Briefly, 5×104 HC dermal fibroblasts were lysed using Laemmli sample buffer (S3401, Sigma) and subsequently 15 µl of total cell lysates were separated by SDS polyacylamide gel and electrophorised onto nitrocellulose membrane. To detect proteins expression antibodies against human TIMP-1 (ab1827, Abcam), TAB1 (C25E9, Cell Signaling), GAPDH (ab9484, Abcam) and secondary HRP- conjugated (Dako) antibody were used. TIMP-1 and MMP-1 (both R&D Systems) protein concentration in culture supernatants were measured by ELISA according to the manufacturer’s protocol. Signal development was performed using HRP/Streptavidin and OPD substrate (Sigma-Aldrich) at room temperature. Fluorescence was measured using a plate reader (Tecan, Sunrise). Samples were run in duplicate and serial dilution was performed in order to fall within the detection limits of the assay (0–80 ng/ml).
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8

Stretching Effects on Soleus Muscle in Rats

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Female Wistar rats were used in accordance with the International Ethics Standard for animal experiments. The study was approved by the local Ethics Committee on animal use (protocol n° 732/2012).
The rats were randomly allocated into 2 groups, namely, the Control (CG, n=7) and Stretching (SG, n=8) groups, with the latter being chosen to receive the stretching exercise protocol. The CG was also anesthetized and positioned on the stretching apparatus to be subjected to similar handling and recovery to that of the SG. All rats were subjected to euthanasia after the one-week experimentation period.
After dissection, the soleus muscle was weighed and divided longitudinally into two equal parts for immunohistochemical analysis and extraction of the total RNA according to established methods (15 (link),20 (link)). Immunohistochemical analyses were performed as previously described (15 (link)).
The primary antibodies specific for the immunohistochemical reaction used were as follows: TNF-α: human monoclonal TNF-α (1:50 dilution) (MA-091-5, Imuny Biotechnology, Campinas, SP, BR) and mouse monoclonal TIMP-1 (1:100 dilution) (AB1827, Abcam, Cambridge, MA, USA). A tissue known to express the antigen of interest served as a positive control, whereas experiments performed by omitting the primary antibody constituted the negative control.
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