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11 protocols using lymphoprep gradient

1

Monocyte-Derived Dendritic Cell Generation

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Monocytes were isolated from peripheral blood mononuclear cells (PBMCs) from buffy coats of healthy donors (Sanquin) by a lymphoprep gradient (Axis-Shield) and subsequent percoll gradient centrifugation (Amersham). Informed consent was obtained from all blood donors for the use of their blood. DCs were generated by culturing purified monocytes in RPMI1640 (Invitrogen) supplemented with 10% fetal bovine serum (BioWhittaker), 1000 U/ml penicillin/streptomycin (Lonza), and 2 mM glutamine (Lonza) in combination with IL-4 (262.5 U/ml; Biosource) and GM-CSF (112.5 U/ml; Biosource) for 4–7 days. Ten nanograms per milliliter LPS was added for indicated time periods to mature cells. HD7 cells, a CD4+ T-cell clone that recognizes a peptide derived from mouse IgG1 antibodies in HLA-DR0101/DQw1, were used as T-cell responders (1 (link), 3 (link), 26 (link)).
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2

Isolation of CD14+ Monocytes and CD4+ T Cells

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Peripheral blood mononuclear cells (PBMCs) were isolated on a LymphoPrep gradient (Axis-Shield, Dundee, Scotland, UK), according to the manufacturer’s instructions, followed by washing in HBSS (Invitrogen). Isolated PBMCs were used for isolation of CD14+ monocytes or CD4+ T cells by positive selection using immunomagnetic cell sorting. PBMCs were resuspended in sterile MACS buffer (phosphate buffer saline (PBS) supplemented with 2 mM EDTA (Sigma-Aldrich, Saint Louis, Missouri, USA) and 0.5% fetal bovine serum (FBS)), and the CD14+ or CD4+ cells were isolated with anti-CD14 or anti-CD4 mAb-coated MicroBeads, according to the manufacturer’s protocol), using MS MACS columns (all from MiltenyiBiotec, BergischGladbach, Germany).
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3

Isolation and Cryopreservation of PBMCs

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Peripheral Blood Monocluear cells (PBMCs), obtained from the National Blood Transfusion Service, were isolated on a Lymphoprep gradient (Axis Shield), aliquoted in FCS + 10% dimethyl sulfoxide (Sigma Aldrich) and stored in liquid nitrogen until required.
B cells were isolated by negative magnetic selection using EasySep™ Human B cell Enrichment Kit (STEMCELL technologies), following the manufacturer’s instructions.
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4

Isolation and Characterization of PBMC

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Blood was collected in ethylenediaminetetraacetic acid 9 mL tubes, diluted with an equal volume (9 mL) of 1% phosphate-buffer and then layered over a 9 mL Lymphoprep gradient (Axis-Shield, Oslo, Norway). The tubes were centrifuged at 1,400 rpm for 30 minutes at 10°C. The buffy-coat layer was transferred to 15 mL RNAse-free tubes, diluted with phosphate-buffered saline and centrifuged at 1,000 rpm at 10°C. The supernatant was discarded and PBMC were retained and ready for RNA isolation. RNA was extracted from PBMC with the RNeasy Mini Kit (Qiagen, Valencia, CA, USA). RNA purity and concentration were assessed by spectrophotometry. mRNA was reverse-transcribed into sscDNA using the RevertAid Premium First Strand cDNA Synthesis Kit (Thermo Fisher Scientific, Waltham, MA, USA).
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5

Monocyte Isolation and Characterization

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Peripheral blood lymphocytes were enriched using a lymphoprep gradient (Axis Shield, Oslo, Norway) as described (11 (link)), and monocytes were purified with magnetic beads (Stemcell Technologies, Köln, Germany). Purity was assessed on the basis of CD14/CD16 staining by flow cytometry using a FACSCanto II device (BD Biosciences, Heidelberg, Germany), and routinely >95% (Figure 1). Monocytes were analyzed directly or cultured for 3 h in RPMI 1640 medium supplemented with 0.5% fatty acid-free BSA under serum-starved conditions in the presence or absence of 10−6 M MP. One portion of the cells was used for RNA isolation and surface marker analyses and the other portion served to assess the migratory capacity.
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6

Isolation and Cryopreservation of PBMCs

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Heparinized syringes were used to obtain peripheral blood samples (20 mL) by venipuncture. Layering over the surface of a discontinuous LymphoPrep gradient (Axis-Shield, Oslo, Norway) and subsequent centrifugation were utilized to isolate PBMCs from each blood sample. A protocol involving two washings of isolated PBMCs with RPMI 1640 (GIBCO™, Thermo Fisher Scientific, Waltham, MA, USA) was applied afterwards. Cells were then enumerated using a Neubauer hemocytometer. Moreover, cell viability was assessed for each sample by trypan blue exclusion dye and routinely surpassed 95%. A cell cryoprotective solution consisting of 10% DMSO, 30% RPMI 1640, and 60% fetal calf serum (FCS) was produced. PBMCs were then re-suspended in that medium and aliquoted into cryotubes (Corning™, Thermo Fisher Scientific, Waltham, MA, USA). Aliquots were kept at − 80 °C for 24 h, and then were stored in liquid nitrogen containers until further use.
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7

Leptospira Triggers Coagulation Pathway

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Human PBMCs were purified from citrated blood using Lymphoprep gradient (AXIS-SHIELD), according to the manufacturer instructions. Equal volumes of PBMCs suspensions (5x106 cells/mL) and leptospires (2x107/mL) or bacteria culture supernatants were mixed and incubated at 37°C for 2 h. Buffer alone or EMJH were used as controls. The PBMCs were pelleted by centrifugation and resuspended in 600 μL normal plasma or FVII-deficient plasma diluted 50% in HEPES-ZnCl2. Normal plasma was used to verify the general status of the coagulation, while FVII-deficient plasma as a control to exclude the activity of the TF/extrinsic pathway of coagulation. The recalcification clotting times were measured by addition of 50 μL 30 mM CaCl2 to 100 μL of sample. Alternatively, the aPTTs were measured in order to verify the status of the intrinsic (contact system) and common pathways of coagulation. aPTTs were obtained by addition of 50 μL aPTT reagent to 50 μL of sample followed by 200 s incubation and addition of 50 μL 30 mM CaCl2.
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8

Isolation of Monocytes and T Cells

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Peripheral blood mononuclear cells (PBMCs) were isolated on a LymphoPrep gradient (Axis-Shield, Dundee, Scotland, UK), according to the manufacturer's instructions, followed by washing in HBSS (Invitrogen). Isolated PBMCs were used for isolation of CD14 + monocytes or CD4 + T cells by positive selection using immunomagnetic cell sorting. PBMCs were resuspended in sterile MACS buffer (phosphate buffer saline (PBS) supplemented with 2 mM EDTA (Sigma-Aldrich, Saint Louis, Missouri, USA) and 0.5% fetal bovine serum (FBS)), and the CD14 + or CD4 + cells were isolated with anti-CD14 or anti-CD4 mAb-coated MicroBeads, according to the manufacturer's protocol, using MS MACS columns (all from MiltenyiBiotec, BergischGladbach, Germany).
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9

Isolation and Purification of NK Cells

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PBMCs were isolated using a Lymphoprep gradient (Axis-Shield) from fresh blood of healthy donors and four BFPP patients diagnosed with single mutations in GPR56. Studied were two newly identified Dutch siblings, 46 and 49 years old (1693C > T, R565W), and two previously described Palestinian siblings, 25 and 26 years old (1036T > A, C346S) (Piao et al., 2004) . Samples were obtained under informed consent and in accordance with the ethical guidelines of the Academic Medical Center, Amsterdam, the Netherlands; the Radboud University Medical Center, Nijmegen, the Netherlands; and the Schneider Children's Medical Center, Petah Tiqva, Israel. CD56 + CD3 À NK cells with R99% purity were isolated on a BD FACSAria III Cell Sorter (BD Biosciences).
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10

Isolating EBV-specific T cells from healthy donors and patients

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Blood samples were obtained from EBV seropositive healthy volunteers and patients with EBV-positive lymphoma with informed consent using Baylor College of Medicine, Institutional Review Board-approved protocols. Buffy coats were purchased from the Gulf Coast Regional Blood Center, Houston, Texas, USA. PBMCs isolated on Lymphoprep gradients (Axis Shield, Oslo, Norway) were used to generate VSTs and activated T cells (ATCs) for use as antigen presenting cells (APCs). The universal (U) EBV-transformed lymphoblastoid cell line (LCL) and K562cs used as co-stimulatory cell lines are described in the online supplemental materials and methods.
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