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10 protocols using recombinant il 3

1

Evaluating Cytotoxic Effects on BCP-ALL Primografts

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For testing drug cytotoxic/cytostatic effects, BCP‐ALL primografts were cocultured with BM‐MSC (Pal et al., 2016). To this end, BM‐MSC were seeded onto 48‐well plate at a density of 2.5–5.0 × 104 cells per well, in DMEM (low glucose) supplemented with 20% FBS (Gibco), 2 mm of l‐glutamine (Sigma‐Aldrich), and 1% penicillin/streptomycin solution (Sigma‐Aldrich). The next day, BCP‐ALL primograft cells were added at a density of 0.5 × 106 cells·mL−1 in SFEM II media (STEMCELL Technologies) supplemented with 20% FBS (Gibco), 20 ng·mL−1 of recombinant IL‐3 (R&D Systems, Minneapolis, MN, USA), 10 ng·mL−1 of recombinant IL‐7 (R&D Systems), and penicillin/streptomycin solution (Sigma‐Aldrich). After 24 h of coculture, cells were treated with auranofin (AUR) or adenanthin (ADE) at indicated concentration ranges, in a final volume of 700 μL. For each drug concentration, samples were run in duplicate. After 5 days, cells in suspension (BCP‐ALL cells) and adherent cells (BCP‐ALL+MSC) were collected and the number of viable cells was assessed in a hemocytometer. The numbers of viable BCP‐ALL cells in control groups after 5‐day‐long coculture exceeded the number of seeded cells, confirming the growth‐supporting role of BM‐MSC. Primograft samples used in drug‐testing experiments are listed in Table S7.
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2

Culturing Primary Human ALL Cells with MSCs

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Primary human ALL cells were obtained after informed consent at West Virginia University Cancer Center; Cincinnati Children’s Hospital Medical Center Respiration Core; and Pittsburgh Biospecimen Core under the approved Institutional Review Broad (IRB) protocols: #1310105737; STUDY19030357 and # 2011-3023. Primary human ALL cells were cultured on hTERT-immortalized primary BM mesenchymal stromal cells (MSCs)39 ,40 (link). MSCs were seeded at a density of 104 cells/cm2 in MSC medium 48 h prior to adding to ALL. ALL cells were seeded onto MSC at a density of 2 × 106 cells/ml in SFEM II medium (StemCell Technologies, Vancouver, BC, Canada) supplemented with 20% fetal calf serum (GIBCO, Life Technologies), 20 ng/ml recombinant IL-3 (R&D Systems, Abingdon, UK) and 10 ng/ml recombinant IL-7 (R&D Systems, Minneapolis, MN). ALL cells were harvested every 7 days. Non-adherent cells present in supernatant medium were washed with PBS and passed through a 15 μm filter (pluriSelect Life Science, Leipzig, Germany). ALL cells were separated from MSCs by magnetic cell separation using hCD45 microbeads (Miltenyi Biotec, Auburn CA). Viable ALL cells were counted by Trypan blue exclusion, re-suspended in fresh ALL medium, and seeded onto fresh MSC.
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3

Isolation and Stimulation of Plasmacytoid Dendritic Cells

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Leukopacks were obtained from the Etablissement Français du Sang. Peripheral blood mononuclear cells (PBMCs) were recovered using density gradient centrifugation. The pDCs were isolated using magnetic beads on AutoMacs (Miltenyi Biotech) as previously described (Ka et al., 2014 (link)). Briefly, pDCs were isolated by depletion of non-pDCs that were retained in the column, while unlabeled pDCs with high purity (90%) were collected in the flow-through. Plasmacytoid dendritic cells were then suspended in RPMI 1640, supplemented with 20 mM HEPES, 10% fetal calf serum, 2 mM L-glutamine, 100 U penicillin/ml, 50 μg/ml streptomycin (Life Technologies), and 10 ng/ml recombinant IL-3 (R&D Systems), as described previously (Dental et al., 2012 (link)) and were stimulated with heat-inactivated (100°C for 30 min) C. burnetii organisms (bacterium-to-cell ratio of 50:1), or CpG-A 10 μg/mL (ODN 2216; InvivoGen) for 8 or 24 h.
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4

Intranasal CpG, IL-3, and CXCL12 infection

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Naive mice were anesthetized with isoflurane and infected intra-nasally with 8 µg of CpG (Enzo Life Sciences, Farmingdale, NY, USA), 400 ng of recombinant IL-3 (R&D Systems, Minneapolis, MN, USA), 500 ng of recombinant CXCL12 (Peprotech, Rocky Hill, NJ, USA), 50 µg of IgG or anti-CXCL12 (R&D systems), and 6 × 106 PFU HSV-1 in a volume of 15 µl saline. For the pDCs depletion experiment, 150 µg of IgG or anti-CD317 (Miltenyi) were injected intravenously 15 h before IL-3 and CpG injection.
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5

FGFR2-Driven Ba/F3 Cell Viability

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Ba/F3 cells were obtained from the RIKEN BRC CELL BANK (Ibaraki, Japan) and cultured in RPMI 1640 supplemented with 10% fetal bovine serum and 1 ng/mL recombinant IL3 (R&D Systems). Then, 5 × 106 cells were electroporated with 2.5 mg pcDNA3.1/FGFR2-constructs, pcDNA3.1/FGFR2-ACSL5 fusion constructs, or parental pcDNA3.1, using the Nucleofector system (Lonza, Basel, Switzerland). The cells were selected in medium containing G418 for 2 weeks and the expression of the full-length fusion transcripts was confirmed by immunoblotting. For detection of cell viability, 5 × 103 Ba/F3 cells per well were plated in quadruplicate in 96-well plates with various concentrations of IL3 or AZD4547. After 72 hours, cell viability was determined using CellTiter-Glo.
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Isolation and Culture of Plasmacytoid Dendritic Cells

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Peripheral blood mononuclear cells (PBMCs) from healthy anonymous donors were obtained from the national blood services (Etablissement Francais du Sang, Marseille, France). Blood samples were obtained after written consent following the approval of the EFS, Marseille, France, and the Center de Recherche en Cancérologie de Marseille (CRCM) in accordance to the convention signed the 20th May 2014. pDCs purified from PBMCs as described previously were 75–95% pure, with a contamination of less than 5% mDCs (32 (link), 33 (link), 52 (link), 53 (link)). Isolated pDCs were cultured in RPMI 1640 supplemented with 10% fetal calf serum (FCS). To optimize viability in overnight experiments, recombinant IL-3 (R&D Systems Europe, Ltd., Abingdon, UK) was added to a final concentration of 10 ng/mL.
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Isolation and Culture of Primary Human pDCs

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Peripheral blood mononuclear cells (PBMCs) isolated using Lympholyte-H (Cedarlane) were cultured in complete medium consisting of RPMI1640 supplemented with 10% fetal calf serum, 100 U/mL penicillin, and 100 U/mL streptomycin. Primary human pDCs were purified from PBMCs using Diamond Plasmacytoid Dendritic Cell Isolation Kit II (Miltenyi Biotec), and purity was always >90%. PDCs were cultured in complete medium containing 0.1 ng/mL of recombinant IL-3 (R&D systems).
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8

Generation and Reconstitution of Bone Marrow-Derived Mast Cells

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To generate BMMCs for both in vitro experiments and in vivo reconstitution studies, bone marrow was flushed from mouse femurs and cultured in RPMI medium containing 10% FBS, penicillin and streptomycin, HEPES, 1% supernatant from Cho-KL cells containing stem cell factor (produced in-house), and recombinant IL-3 (5 ng/mL, R&D Systems, Minneapolis, MN; #203-IL-010). MCs were verified to be >95% pure by toluidine blue staining (Sigma-Aldrich, St. Louis, MO) prior to use. Peripheral reconstitution of Sash mice was performed by injecting 1 × 107 BMMCs i.v., followed by a 6-week period to allow complete engraftment, as previously described42 (link),64 (link). CNS reconstitution of Sash mice was performed by injecting 1 × 106 MCs i.c.v., followed by a 16-week period for engraftment in the brain43 (link). For depletion of CNS-resident MCs in the MCPT5-CRE; iDTRfl/fl mice, DT (dose 0.5 µg/kg) was injected i.c.v. into the brain at days 0 and 4, with experiments performed on day 6. This dose was found to be optimal because higher doses of DT were observed to be toxic. For administration of chymase, 30 ng of purified chymase (Sigma-Aldrich, St. Louis, MO; #97501-92-3) is injected i.p. at days 1 and 3 post-infection of Sash mice.
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9

Intranasal HSV-1 Infection in CLP Mice

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CLP mice were anesthetized with isoflurane and infected intra-nasally with 15x106 PFU HSV-1 in a volume of 15µl saline, 8 μg of CpG (Enzo Life Sciences, Farmingdale, NY, USA), 400 ng of recombinant IL-3 (R&D Systems, Minneapolis, MN, USA) or 500 ng of recombinant CXCL12 (Peprotech, Rocky Hill, NJ, USA).
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10

Plasmacytoid Dendritic Cell Activation

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Purified pDCs were cultured in RPMI-1640 GlutaMax supplemented with 10% fetal calf serum (FCS) and 100U/ml of Penicillin-Streptomycin at 37°C in the presence of 5% CO2. pDCs were stimulated (in 96-well plates at 5x104 cells/ml) by CpG (4 µg/mL) (Miltenyi Biotec), R848 (10 µg/mL) (In vivogen, Toulouse, France) or recombinant IL-3 (40 ng/mL) (R&D systems). After 24h, pDCs were stained for phenotypic analysis, or collected for the mixed lymphocyte reaction (MLR), or their supernatants were collected for cytokine measurement. For MLR experiment, activated pDCs were washed once with PBS and then co-cultured for 6 days in 96-well plates with allogenic T cells stained with 5μM of CFSE (Biolegend) (pDC: T cell ratio 1:5). Then, T cells were stained for phenotypic analysis or their supernatants were collected for cytokine measurement.
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