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6 protocols using ferrostatin 1

1

Ferroptosis and Cell Death Modulators

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The following compounds were obtained from TargetMol (USA): RSL3 (T3646), IKE (T5523), ferrostatin-1 (T6500), deferoxamine mesylate (T1637), Z-VAD (OMe)-FMK (T6013), necrosulfonamide (T7129), FIN56 (T4066), FINO2 (T60084), LF3 (T7399), SKL2001 (T6989), cisplatin (T1564), aminoguanidine hydrochloride (T0358). The following compounds were obtained from MedChemExpress (MCE, USA): AMXT-1501 (HY-124617A), DFMO (HY-B0744), GC7 (HY-108314A). The following compounds were obtained from Sangon Biotech (China): l-arginine (A600205), l-citrulline (A604057L), l-proline (A600923), putrescine dihydrochloride (A600793). The following compounds were obtained from Aladdin (China): L-ornithine monohydrochloride (O108803), urea (A610148), spermidine (S107071), spermine (S109704), ammonium ferric citrate (A100170).
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2

Multiparametric Analysis of Cell Death

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The antibodies to PARP (66520-1-Ig), Ki67 (27309-1-AP), NPM1 (10306-1-AP), and GPX4 (67763-1-Ig) were purchased from Proteintech. The antibodies to GPX4 (A1933), GAPDH (AC001), p-NPM1 Thr199 (AP0836), Bax (A19684), Bcl2 (A0208), and YAP1 (A1002) were purchased from ABclonal. The antibody to AURKA (#14475) was purchased from Cell Signaling Technology. The antibodies to p-NPM1 Ser125 (AF3740), p-NPM1 Ser4 (AF8496), and p-NPM1 Thr95 (AF2372) were purchased from Affinity Biosciences. The small-molecule library, TCS7010, ZVAD-FMK, necrostatin-1, ferrostatin-1, and chloroquine were purchased from TargetMol.
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3

Antibody-Based Ferrostatin-1 Pathway Study

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Antibodies used in this study include anti-GAPDH (60004-1-Ig, Proteintech), anti-FSP1 (20886-1-AP, Proteintech), anti-GPX4 (ab125066, Abcam), anti-TFRC (A5865, ABclonal), anti-SLC7A11 (A2413, ABclonal), anti-TRIM54 (21074-1-AP, Proteintech), anti-ERK (#4695, Cell Signaling Technology), anti-ubiquitin (sc-9133, Santa Cruz Biotechnology), and horseradish peroxidase-conjugated secondary antibodies (VA001 and VA002, Vicmed). Reagents used in this study include Sorafenib (T0093L, Targetmol), Ferrostatin-1 (A4371, APE × BIO), Z-VAD-FMK (A1902, APE × BIO), Necrosulfonamide (B7731, APE × BIO), cycloheximide (C7698-1G, SIGMA), MG-132 (A2585, APE × BIO), and PD98059 (HY-12028, MedChemExpress).
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4

Ferroptosis Inhibitors and Inducers

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Ferrostatin-1(T6500), Liproxstatin-1(T2376), Deferoxamine(DFO, T1637), Z-VAD-FMK(T6013), Necrosulfonamide(T7129) and 5-FU(T0984) were obtained from TargetMol (Shanghai, China). BafilomycinA1(S1413) and Erastin(S7242) were obtained from Selleck (Houston, TX, USA). The Synthetic methods and Routes of W1131 are described in detail in Supplemental Information.
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5

Investigating Apoptosis and Necroptosis Pathways

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Antibodies against GAPDH (#97166S, 1 : 1000), PARP (#9542S, 1 : 1000), caspase-3 (#9662S, 1 : 1000), cleaved caspase-3 (#9664S, 1 : 1000), caspase-8 (#9746S, 1 : 1000), cleaved caspase-8 (#9496S, 1 : 1000), Bax (#5023S, 1 : 1000), Bcl-2 (#15071S, 1 : 1000), p-RIP1 (Ser166; #65746S, 1 : 1000), RIP3 (#95702S, 1 : 1000), anti-rabbit IgG, HRP-linked antibody (#7074S, 1 : 3000), and anti-mouse IgG, HRP-linked antibody (#7076S, 1 : 3000) were obtained from Cell Signaling Technology (Danvers, MA, USA). Antibodies against MLKL (#ab184718, 1 : 1000), p-MLKL (Ser358; #ab187091, 1 : 1000), RIP1 (#ab72139, 1 : 1000), and p-RIP3 (Ser227; #ab209384, 1 : 1000) were purchased from Abcam (Cambridge, UK). Cladribine, homoharringtonine, Z-VAD-FMK, cycloheximide, chloroquine, ferrostatin-1, and necrostatin-1 were purchased from TargetMol (Shanghai, China). Aclarubicin was obtained from APExBIO (Houston, TX). A stock solution containing cladribine, homoharringtonine, and aclarubicin was prepared in DMSO and kept at -80°C. TNF-alpha was purchased from ABclonal (Wuhan, China).
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6

Ferroptosis inhibitors in chondrocytes

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Ferroptosis inhibitors including Ferrostatin-1 (T6500; CAS: 347174-05-4), α-Vitamin E (T1648; CAS: 59-02-9) and Deferasirox (T1457; CAS: 201530-41-8) were purchased from TargetMol, China. Fer-1 and DFX were dissolved in dimethyl sulfoxide (DMSO) solution at the concentration of 10 mM while Vit E was dissolved in DMSO at the concentration of 100 mM. IL-1β was obtained from Sigma, Uited States (SRP3083). Human primary chondrocytes together with the culture system were bought from the Beijing Beina Chuanglian Institute of Biotechnology. Cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM)/F-12 supplemented with 10% fetal bovine serum and 1% penicillin-streptomycin in a 37°C incubator under condition of 5% CO2. After reaching 80%-90% confluence, cells were digested with trypsin (Gibco, United States) and passaged twice per week at a split ratio of 1:3. Cells at passages 3-4 were used for the subsequent experiments.
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