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9 protocols using low endotoxin fetal bovine serum

1

Heme Synthesis and Efflux in Cell Lines

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Human neuroblastoma SH-SY5Y cell line (ATCC no. RL-2266) was propagated in DMEM/F12 medium (TermoFisher Scientific) supplemented with 10% heat-inactivated low-endotoxin fetal bovine serum (TermoFisher Scientific), 100 U/ml penicillin and 100 mg/ml streptomycin.
Control and patient-derived primary fibroblasts were propagated in RPMI 1640 medium (TermoFisher Scientific) supplemented with 15% heat-inactivated low-endotoxin fetal bovine serum (TermoFisher Scientific), 100 U/ml penicillin and 100 mg/ml streptomycin.
Control and patient-derived lymphoblastoid cell lines (LCLs) were propagated in RPMI 1640 medium (TermoFisher Scientific) supplemented with 20% heat-inactivated low-endotoxin fetal bovine serum (TermoFisher Scientific), 100 U/ml penicillin and 100 mg/ml streptomycin.
Cells were maintained at 37°C under a 5% CO2 atmosphere.
To stimulate the endogenous heme synthesis cells were treated with 5mM ALA (A3785; Sigma-Aldrich).
To facilitate heme efflux through FLVCR1a, LCLs were stimulated with 5μM or 15μM Hemopexin (CSL; Behring) under starved conditions.
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2

Hormonal Status of Cancer Cell Lines

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Human ovarian cancer (TOV-112D and OVCAR3) and breast cancer (MDA-MB-231 and MCF-7) cell lines were purchased from the American Type Culture Collection (ATCC, Rockville, MD). These cell lines were selected as they have varied hormonal status: OVCAR-3 cells are HER-2/estrogen receptor (ER)α and ERβ strong positive; TOV-112D cells are ERα-negative and ERβ moderate positive; MCF-7 and MDA-MB-231 cells are ER (+) and ER (-). [35] [36] [37] OVCAR-3 cells were cultured in RPMI 1640 medium (Cat. No. 11875093; Gibco, Grand Island, NY) with 5% low-endotoxin fetal bovine serum (Cat. No. A5256701; Gibco). MCF-7 cells were cultured in MEM (Cat. No. A1048901; Gibco) with 5% low-endotoxin fetal bovine serum and supplemented with 0.1 mM non-essential amino acids and 1.0 mM sodium pyruvate. All cells were cultured in a humidified incubator with 5% CO 2 at 37°C.
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3

Immortalized Bone-Marrow-Derived Macrophage Culture

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Male immortalized bone-marrow-derived macrophages (iBMDMs) with the NF-κB reporter and Cas9 (iBMDM-NFKB-Cas9) cells (previously described in Covarrubias et al., 2017 (link)). Cas9 activity was validated via GFP kd (~75% kd) prior to beginning the screen. Cells were cultured in DMEM, supplemented with 10% low-endotoxin fetal bovine serum (ThermoFisher) and 1X penicillin/streptomycin and incubated at 37°C in 5% CO2.
THP-1 cells were cultured in RPMI 1640 supplemented with 10% low-endotoxin fetal bovine serum (ThermoFisher), 1X penicillin/ streptomycin and 2-mercaptoethanol (0.05 mM, Sigma-Aldrich, M6250), and incubated at 37°C in 5% CO2.
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4

Immortalized Bone-Marrow-Derived Macrophage Culture

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Male immortalized bone-marrow-derived macrophages (iBMDMs) with the NF-κB reporter and Cas9 (iBMDM-NFKB-Cas9) cells (previously described in Covarrubias et al., 2017 (link)). Cas9 activity was validated via GFP kd (~75% kd) prior to beginning the screen. Cells were cultured in DMEM, supplemented with 10% low-endotoxin fetal bovine serum (ThermoFisher) and 1X penicillin/streptomycin and incubated at 37°C in 5% CO2.
THP-1 cells were cultured in RPMI 1640 supplemented with 10% low-endotoxin fetal bovine serum (ThermoFisher), 1X penicillin/ streptomycin and 2-mercaptoethanol (0.05 mM, Sigma-Aldrich, M6250), and incubated at 37°C in 5% CO2.
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5

Murine Mesangial Cell Culture and Treatments

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Murine mesangial cells (MCs) were kindly provided by Dr. Jian Yao (University of Yamanashi, Chuo, Japan) and cultured as described previously (Zhang et al., 2016 (link)). Briefly, MCs were cultured in RPMI-1640 medium supplemented with 10% heat-inactivated low endotoxin fetal bovine serum, penicillin/streptomycin and HEPES (GIBCO, California, USA) at 37°C in a humidified atmosphere containing 95% air and 5% CO2. MCs were treated with normal glucose (Normal, 5.5 mmol/L D-glucose) as control group, mannitol (MNT, 24.5 mmol/L MNT) as osmotic pressure control group, dimethylsulfoxide (DMSO, 0.1% DMSO) as DMSO control group and HG (30 mmol/L D-glucose) without or with HYP at the dose of 5 or 15 μg/ml and RAP at the dose of 20 nmol/L for 24, 48, or 72 h. Here, the low dose of HYP (5 μg/ml) and the high dose of HYP (15 μg/ml) were determined by the reference of Zhang et al. (2016 (link)). As HYP was dissolved in 0.1% DMSO, a similar volume of DMSO was added to DMSO control group.
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6

SH-SY5Y Cell Culture and Preparation

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Human neuroblastoma SH-SY5Y cells were maintained in DMEM/F-12 supplemented with 10% low-endotoxin fetal bovine serum, 2 mM L-glutamine, and 1% penicillin-streptomycin (all from Gibco, Thermo Fisher Scientific, USA). For experiments, cells were plated on clear bottom 96-well plates (Phenoplate, Perkin Elmer, USA) at 6 × 104 cells/well and maintained as described in a previous study (Westbroek et al., 2016 (link)) for 24 h to allow the cells to attach. WT and GBA1 knockout (KO) immortalized neural cells were kindly provided by Ellen Sidransky from the National Institutes of Health, and the generation and characterization of these cells have been described previously (Westbroek et al., 2016 (link)). These cells were cultured in neurobasal growth media supplemented with 2% B27 supplement, 1 mM L-glutamine, and 100 U/mL penicillin-streptomycin (all from Thermo Fisher Scientific, USA) in T75 flasks (Thermo Fisher Scientific, USA) pre-coated with poly-L-lysine (Sigma-Aldrich, USA) at 37°C with 5% CO2. For live cell imaging experiments, 2.5 × 104 cells per well were plated on clear bottom 96-well plates (Phenoplate, PerkinElmer, USA) pre-coated with poly-L-lysine and incubated at 37°C with 5% CO2 until confluent.
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7

Cell Culture Conditions for BV-2, PC12, and 293T

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BV-2 cells (Saiqi, Shanghai, China), PC12 cells (Chinese Academy of Sciences, Shanghai, China), and 293T cells (Chinese Academy of Sciences, Shanghai, China) were cultured in a humidified incubator with 5% CO2 at 37°C. The culture medium was Dulbecco's modified Eagle medium (Gibco, New York, America) supplemented with 5% low-endotoxin fetal bovine serum (Gibco, New York, America), 100 units/ml penicillin (Gibco, New York, America), and 100 μg/ml streptomycin (Gibco, New York, America).
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8

Ex Vivo Expansion of Transduced Cells

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Transduced cells were expanded in cytokine-driven culture by plating 4 × 104 viable cells per ml in Iscove’s modified Dulbecco’s medium supplemented with 10% low endotoxin fetal bovine serum (16000-044, Thermo Fisher Scientific), 2 mM L-glutamine, 50 μg/ml gentamycin, human stem cell factor (50 ng/ml), thrombopoietin (10 ng/ml), Flt3 ligand (50 ng/ml) and interleukin-6 (10 ng/ml). Cells were passaged weekly, and either returned to cytokine-driven culture or used for colony-forming unit assays. See Supplementary Methods for CD34+ cell enrichment and transduction.
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9

Mouse Alveolar and Microglial Cell Culture

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MH-S mouse alveolar macrophage cell line, which is used as a model to study alveolar macrophage functions [24 (link)], was purchased from the American Type Culture Collection (ATCC® CRL-2019™). The mouse microglial BV2 cell line, which is extensively used to study microglia functions [25 (link)], was derived from primary microglial cell cultures infected with v-raf/v-myc oncogene-carrying retrovirus (J2) [26 (link)]. L-929 mouse fibroblast cell line was generously provided by Dr. Biao He lab at University of Georgia (Athens, GA). MH-S, BV2, and L-929 cells were grown in Dulbecco’s modified Eagle’s medium (Millipore Sigma. D6429) supplemented with 10% low-endotoxin fetal bovine serum (Thermo Fisher Scientific, cat#: 10082147) and an antibiotics combination of (1% penicillin/streptomycin) (Thermo Fisher Scientific, cat#: 15140122) and incubated at 37 °C in a humidified atmosphere 5% CO2.
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