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23 protocols using moflow

1

Multiparameter Flow Cytometry Profiling

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Antibodies from eBiosciences included anti-CD8-APC-eFluor780 (47-0081), anti-CD44-APC (17-0441-81), anti-CD69-PERCPcy5.5 (45-0691), anti CD98-PE (12-0981-81; eBiosciences), and anti CD62L-PEcy7 (25-0621). Anti-CD4-BD605NC was acquired from BD Biosciences (San Jose, CA). Cells were stained for 20 minutes at 4°C in PBS, 5% BSA, 0.1% NaN3. Cell proliferation was assessed using Cell Trace Violet (C34557; Life Technologies) according to the manufacturer’s recommendations. Samples were acquired on a BD LSRII flow cytometer and analyzed with Treestar FlowJo software. Cell cycle analysis was performed using BD APC BrdU Flow kit per the manufacturer’s instructions (552598; BD Biosciences). Cells were sorted on a MoFlow (Beckman-Coulter) or Reflection (i-Cyt).
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2

Isolation and Culture of Murine T Cell Subsets

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Lymphocytes were isolated from spleen and peripheral lymph nodes (including inguinal, auxiliary and cervical lymph nodes) or thymus. Naïve CD4+ T cells (CD4+CD25CD44CD62L+), Treg cells (CD4+YFP+ or CD4+CD25+ as indicated in the figures and text) and thymic mature CD4+ T cells (CD4+CD8CD69loCD62Lhi) were sorted on a MoFlow (Beckman-Coulter) or Reflection (i-Cyt). Sorted cells were cultured in plates coated with anti-CD3 (2C11, 10 μg/ml) and anti-CD28 (37.51, 10 μg/ml) for 4.5 days in Click's medium (Irvine Scientific) supplemented with β-mercaptoethanol, 10% (v/v) FBS, 1% (v/v) penicillin-streptomycin and IL-2 (200 U/ml). In certain experiments, Treg cells were stimulated with IL-2 (0-500 U/ml) as indicated in the figures and legends. CD62LhiCD69lo mature thymocytes from WT and Cd4CreStk4f/fStk3f/f mice were differentiated under induced Treg skewing condition (2 μg/ml CD3, 2 μg/ml CD28, 1 ng/ml TGF-β, and 100 U/ml IL-2) with irradiated antigen-presenting cells for 5 days, and Foxp3 expression was examined by flow cytometry. For activated CD4+ T cell blast generation, peripheral CD4+CD25CD44CD62L+ naïve T cells were sorted and stimulated with plate-bound 10 μg/ml CD3+CD28 for 3 days and rested in 100 U/ml IL-2 for another 3 days. Live T cells were purified using Ficoll, and rested without IL-2 for 8 h and then stimulated with IL-2 for the indicated time points.
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3

Apoptosis Detection in Cancer Cells

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To detect the apoptosis of HGC-27 and MGC-803 cells, flow cytometric analysis was conducted with an Annexin V-FITC/PI Apoptosis Detection Kit (KeyGEN Biotech, Nanjing, China) according to the manufacturer's instructions. Data acquisition and analysis were performed using MoFlow (Beckman Coulter, Atlanta, GA, USA).
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4

Adoptive Transfer of Regulatory T Cells

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Lymphocytes were isolated from lymphoid organs (spleen and peripheral lymph nodes that included inguinal, auxiliary and cervical lymph nodes) and naïve and Treg cells were sorted on a MoFlow (Beckman-Coulter) or Reflection (i-Cyt). For adoptive transfer, CD4+CD25+Foxp3-YFP+ cells from WT and Ptenfl/flFoxp3-Cre mice (CD45.2+) were transferred to the congenically marked (CD45.1+) recipients. Seven days after the transfer, mice were euthanized for the analysis of Foxp3 and CD25 expression.
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5

Flow Cytometry Analysis of Blood and Bone Marrow

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Cell counts were performed on blood collected from the retroorbital plexus into Microtainer tubes containing EDTA (Sarstedt) using an Advia 2120 hematological analyser (Siemens). For total body bone marrow and blood cell counts, 1 femoral bone was calculated as 6% of whole body bone marrow [25 (link)] and a blood volume of 2mL was assumed. Flow cytometric analysis was performed on BD Bioscience LSRFortessa or LSR2 cell analysers. Cell sorting was performed on an Influx (BD Bioscience) for granulocytes or MoFlow (Beckman Coulter) for CD8+ T cells. Antibodies were sourced in-house: CD2 (clone RM2-5), CD45.1 (A20), CD11b (M1/70), Gr-1 (RB6-8C5), CD25 (PC61/F7); from Biolegend: CD3 (17A2), CD8 (53–6.7), PD-1 (29F.1A12), ICAM-1 (YN1/1.7.4), LPAM-1 (DATK32); eBioscience: KLRG1 (2F1); or BD Pharmingen: CD44 (IM7), CD45.2 (S450-15-2 or 104), CD49d (9C10), CD62L (MEL-14), CD69 (H1.2F3), CXCR3 (CXCR3-173), TCRβ (H57-597), LFA-1a (2D7).
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6

Macrophage and Endothelial Cell Profiling

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Alveolar and interstitial macrophages as well as endothelial cells (CD31, clone MEC13.3) were sorted into Trizol (Life Technologies, Grand Island, NY) using a Beckman Coulter MoFlow. RNA was isolated and converted into cDNA. cDNA (30 ng) was assessed for DAP12, CXCL1, CXCL2, IL-6, TNFα, and β2 microglobulin (Life Technologies) on a Roche LightCycler® 480 using iTaq Universal Probes Supermix (BioRad, Hercules, CA).
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7

Quantifying Intestinal Intraepithelial Lymphocytes

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The number of IELs was calculated with CountBright™ absolute counting beads according to the manufacturer's instructions (Invitrogen). The IELs were stained with a combination of the following fluorescence-conjugated mAbs: CD3-PE-CY7, CD8α-APC, CD8β-FITC, CD4-PE, TCRβ-APC, TCRγδ-FITC, CD103-PE, and CD69-FITC. All antibodies were purchased from Biolegend (SanDiego, USA). Cells were suspended in 100 μL staining buffer (eBioscience, SanDiego, USA) with saturating amounts of antibodies and incubated for 30 min on ice and placed in the dark. The apoptotic ratios for the IELs were measured by flow cytometry according to the manufacturer's protocol. Flow cytometry was performed with standard techniques. The image acquisition and data analysis were performed with MoFlow (Beckman Coulter, US) and Flowjo (Three Star, Ashland, USA).
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8

Thymic and Peripheral T Cell Characterization

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Lymphocytes were isolated from the thymus, spleen, PLNs, MLNs, and blood. For analysis of surface markers, cells were stained in PBS containing 2% BSA with appropriate surface antibodies: anti-B220 (RA3-6B2), anti-CCR7 (4B12), anti-CD4 (RM4-5), anti-CD8a (53–6.7), anti-CD24 (M1/69), anti-CD25 (PC61.5), anti-CD44 (1M7), anti-CD45.1 (A20), anti-CD45.2 (104), anti-CD62L (MEL-14), anti-CD69 (H1.2F3), anti-Qa2 (69H1-9-9), anti-TCRβ (H57-597), anti-integrin β7 (FIB504; all from eBioscience), and anti-S1P1 (713412; R&D Systems). For analysis of intracellular Ki-67 expression, Foxp3 fixation/permeabilization buffers were used per manufacturer’s instructions (00-5523-00; ThermoFisher). Active caspase-3 staining was performed per the manufacturer’s instructions (550914; BD Biosciences). Flow cytometry data were acquired on LSRII or LSR Fortessa (BD Biosciences) and analyzed using FlowJo software (Tree Star). DP (CD4+CD8+), CD4SP (CD4+CD8TCRβ+), mature CD4SP (CD4+CD8TCRβ+CD62LhiCD69lo), and semimature CD4SP (CD4+CD8TCRβ+CD62LloCD69hi) thymocytes and naive CD4+ T cells (CD4+CD25CD44loCD62Lhi) were sorted using a MoFlow (Beckman-Coulter) or Reflection (i-Cyt).
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9

Adoptive Transfer of Regulatory T Cells

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Lymphocytes were isolated from lymphoid organs (spleen and peripheral lymph nodes that included inguinal, auxiliary and cervical lymph nodes) and naïve and Treg cells were sorted on a MoFlow (Beckman-Coulter) or Reflection (i-Cyt). For adoptive transfer, CD4+CD25+Foxp3-YFP+ cells from WT and Ptenfl/flFoxp3-Cre mice (CD45.2+) were transferred to the congenically marked (CD45.1+) recipients. Seven days after the transfer, mice were euthanized for the analysis of Foxp3 and CD25 expression.
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10

Cell Surface Receptor Quantification

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Cultured BMCs were harvested and incubated in 0.5% bovine serum albumin (BSA; Seikagaku Kogyo, Tokyo, Japan) for 1 h, then stained with the CXCR4 (1:1000; Abcam) primary antibody for 1 h and rat anti-IgG1-FITC (eBioscience, San Diego, CA, USA) for 30 min at room temperature, following fixation. The equivalent negative control procedure, and one using the secondary antibody only, were performed at the same time. A total of 1  ×  104 events were examined for each subject. The samples were measured and analyzed by Moflow (Beckman Coulter, Brea, CA, USA) or FACS Verse and BD Bioscience FACSuiteTM (Frankin Lake, NJ, USA).
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