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37 protocols using etoposide

1

Etoposide Sensitivity in p16-Knockdown Melanoma

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SKMel28 melanoma cells (p16-wildtype) with stable p16 knockdown (using shp16 hairpin #1) or control (shGFP) were treated with either DMSO or 1μM etoposide (Cayman Chemical, cat#12092) for 6 days (drug replacement every 2 days).
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2

Topoisomerase Inhibitors and Oxidative Stress

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B16-F1 and B16-F10 cells were obtained from American Type Culture Collection (ATCC, Manassas, VA, USA). Topoisomerase inhibitors were purchased from Sigma-Aldrich (St. Louis, MO, USA; camptothecin, merbarone, teniposide, etoposide, XK469, ICRF-193) and Cayman Chemical (Ann Arbor, MI, USA; doxorubicin, moxifloxacin). NAC, LPA and HYD HCl were from Sigma-Aldrich. Fluorescent probes were from Life Technologies (Waltham, MA, USA; DDAOG, C11-BODIPY, CellROX Green, CellTrace Violet), eBioscience (San Diego, CA, USA; CV450) and Sigma-Aldrich (DAPI). Bafilomycin A1 was from Research Products International (Mount Prospect, IL, USA). Primary antibodies were from Millipore (Billerica, MA, USA; anti-γH2AX, clone JBW301) or Abcam (Cambridge, UK; anti-4-HNE, anti-OHdG). Fluorescent secondary antibodies were obtained from Thermo Pierce (Waltham, MA, USA). Cell culture reagents were from Life Technologies (DMEM, pen-strep solution, trypsin-EDTA) and Gemini Biosciences (West Sacramento, CA, USA; fetal bovine serum, stabilized l-glutamine).
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3

Cytotoxic Compound Evaluation Protocol

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Cells were treated as indicated below with the following compounds: CFI-400945 (CAS 1338800-06-8 – Cayman Chemical, USA), doxorubicin (CAS 25316-40-9 – MedChem Express, USA) and etoposide (CAS 33419-42-0 – Cayman Chemical, USA).
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4

Preparation of Anticancer Compound Stocks

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ProTAME was purchased from Boston Biochem (Cambridge, MA) as a 20 mM stock solution in DMSO, stored at −20°C and diluted in RPMI 1640 (Fisher Scientific, Loughborough, UK) immediately before use. Etoposide, doxorubicin and vincristine were purchased from Cayman Chemical (Cambridge, UK), reconstituted in DMSO and stored at −20°C.
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5

Antibody Reagents for Cellular Analysis

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Staurosporine was obtained from LC Laboratories (Woburn, MA), etoposide was from Cayman Chemical (Ann Arbor, MI), gemcitabine was from Toronto Research Chemicals (Toronto, ON, Canada), and nocodazole, puromycin and thymidine were from Sigma-Aldrich (St. Louis, MO). BrdU was obtained from BD Pharmingen (San Diego, CA). Polyclonal antibodies to PDZRN3 were generated and purified as described previously16 (link). Rabbit polyclonal antibodies to cyclin A2 (GTX103042) and to Mre11 (GTX118741) were obtained from GeneTex (Irvine, CA), those to cytochrome c (#21680) were from Signalway Antibody (College Park, MD), those to glyceraldehyde-3-phosphate dehydrogenase (GAPDH, 2275-PC) were from Trevigen (Gaithersburg, MD), and those to cleaved caspase-3 (#9661), to Ser15-phosphorylated p53 (#9284), to Ser473-phosphorylated Akt (#9271), and to Akt (#9272) were from Cell Signaling Technology (Danvers, MA). Mouse monoclonal antibodies to α-tubulin (T-9026), to p53 (#2524), to Ser139-phosphorylated H2AX (GTX628789), and to BrdU (66241-1-Ig) were from Sigma-Aldrich, Cell Signaling Technology, GeneTex, and Proteintech group (Chicago, IL), respectively, and rabbit monoclonal antibodies to Ki-67 (RM-9106-R7) were from Thermo Fisher Scientific (Waltham, MA). Phosphatase and protease inhibitor cocktails were obtained from Roche (Branchburg, NJ).
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6

Genotoxic Drug-Induced Cellular Responses

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Etoposide (Topoisomerase II inhibitor, induces double-strand breaks in genomic DNA) (33419–42-0, Cayman Chemical), Cisplatin (forms intrastrand cross-links with purine bases in genomic DNA) (CAS 15663–27-1, Merck Millipore), Bleomycin (catalyses single-strand as well as double-strand breaks in genomic DNA) (CAS 9041–93-4, Merck Millipore), Doxorubicin (DOXO) (Topoisomerase II inhibitor, induces double-strand breaks in genomic DNA) CAS 25316–40-9, Merck Millipore), Carboplatin (forms intrastrand cross-links with purine bases in genomic DNA) (CAS 41575–94-4, Merck Millipore), Nutlin-3 (MDM2 antagonist, stabilizes p53) (CAS 548472–68-0, Sigma-Aldrich) and Actinomycin D (Intercalates with genomic DNA, inhibits transcription) (CAS 50–76-0, Sigma-Aldrich) were dissolved in DMSO (CAS 67–68-5, AppliChem GmbH) to prepare stock solutions. These were diluted in cell culture media to achieve the indicated final drug concentrations. At the indicated time point post drug treatments, cells were lysed in TRI reagent for RNA extraction or RIPA buffer (50 mM Tris–HCl, pH 8.0, 150 mM NaCl, 1.0% NP-40, 0.5% sodium deoxycholate supplemented with protease and phosphatase inhibitors) for protein extraction.
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7

MDA-MB-231 Cell Culture and Cytokine Stimulation

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MDA-MB-231 human breast cancer cells (American Type Culture Collection, Manassas, VA) were cultured in L-15 Leibovitz's Medium (Corning, Manassas, VA) supplemented with 10% fetal bovine serum (Atlanta Biologicals, Flowery Branch, GA) and maintained at 37°C with atmospheric CO2 according to the suppliers instructions. Purified recombinant cmvIL-10, hIL-10, IFNγ, IL-6 and anti-cmvIL-10, anti-hIL-10, anti-IL-10R, and anti-serpin E1/PAI antibodies were purchased from R&D Systems (Minneapolis, MN). Total Stat3, pStat3 (Y705), total Stat1, and pStat1 (Y701) antibodies were from Cell Signaling Technology (Danvers, MA). The Stat3 inhibitor was from Santa Cruz Biotechnology (Dallas, TX), the Jak1 and p38 MAPK inhibitors were from Calbiochem/EMD Millipore (Billerica, MA). Etoposide was from Cayman Chemicals (Ann Arbor, MI) and purified recombinant human EGF was from Peprotech (Rocky Hill, NJ). The HCMV strain AD169 (ATCC) was propagated in human foreskin fibroblasts (HFF, also from ATCC), maintained in Dulbecco’s modification of Eagle’s medium (Corning) containing 15% fetal bovine serum.
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8

Synthesis and Characterization of BaP-7,8-dihydrodiol

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Benzo[a]pyrene (BaP; CAS no. 50-32-8; purity ≥96%), cisplatin (CAS no. 15663-27-1, crystalline) and ellipticine (CAS no. 519-23-3; purity ≥98%) were obtained from Sigma-Aldrich. Etoposide (CAS no. 33419-42-0; purity ≥98%) was obtained from Cayman Chemical. The BaP metabolite (±)-trans-7,8-dihydroxy-7,8-dihydro-BaP (BaP-7,8-dihydrodiol) that was used as a standard for HPLC was synthesised at the Biochemical Institute for Environmental Carcinogens using earlier published methods (Platt and Oesch, 1983 ; Yagi et al., 1977 (link)). Mass spectrometry data and high field 1H NMR spectra (400 MHz) for BaP-7,8-dihydrodiol were in essential agreement to those published previously.
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9

Evaluation of Anticancer Compounds

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Veliparib was provided by AbbVie. Etoposide, GSK461364, ABT-263, DMXAA and C178 were purchased from Cayman Chemical.
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10

Inhibiting Cellular Pathways in B Cells

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GC7 (Merck Millipore) was added for 24 hours to B cells (10 μM) on day 2 after B cell stimulation (unless otherwise indicated) or to Jurkat/NIH 3T3 cells (100 μM). 10 nM bafilomycin A1 (Cayman Chemical), 10 μg/ml cycloheximide (Sigma), or 100 nM Torin 1 (Cayman Chemical) were added to cells for 2 hours. 10 μM etoposide (Cayman Chemical) or 1 μM thapsigargin (Cayman Chemical) was added to cell culture for 6 hours, or 1 mM difluoromethylornithine (DFMO, Enzo Life Sciences) for 24 hours.
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