hydrolases were examined for endopolyphosphatase activity, typically
in a two-stage assay. In the first stage, polyP-MU or SAP-treated
polyP-NOL was incubated with endoacting enzyme (Nudt2 or Nudt3, Fitzgerald
Industries International; Acton, MA) in the appropriate buffer at
37 °C, after which the reactions were chilled on ice. Buffer
conditions were the following: for Nudt2, 8 mM SAP-treated polyP-NOL
or 2 mM polyP-MU, 50 mM HEPES pH 7.4, and 5 mM MgCl2; for
Nudt3: 5.5 mM SAP-treated polyP-NOL or 2 mM polyP-MU, 25 mM HEPES
pH 7.4, 20 mM NaCl, 10 mM MgCl2, and 1 mM dithiothreitol.
For the second stage, a solution of CIAP in 100 mM Tris-HCl pH
8.8, 0.2 mM ZnCl2 was prepared and warmed to 37 °C
in 96-well polystyrene plates (Corning; Tewksbury, MA). The second
stage was initiated by pipetting 100 μL of the chilled nudix-polyP
reaction into prewarmed wells containing 100 μL CIAP solution,
after which the rate of dye release was monitored spectrophotometrically
at 37 °C. For polyP-NOL substrate, absorbance at 400 nm was measured
using a SpectraMax M2 microplate reader (Molecular Devices; Sunnyvale,
CA); for polyP-MU substrate, fluorescence was quantified in fluorescence
mode using excitation at 360 nm, emission at 450 nm, and a 435 nm
cutoff filter.