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12 protocols using bcl 2

1

Western Blot Analysis of Cell Signaling

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Western blotting was performed as previously described. Tissues and cultured cells were lysed in RIPA buffer (Beyotime Biotechnology, Shanghai, China, P0013B) supplemented with 1 mM PMSF (Beyotime Biotechnology, ST505) for 30 min on ice. Protein extracts were obtained by centrifugation for 30 min at 4°C. Proteins were separated on SDS-PAGE gels and transferred to PVDF membranes. Membranes were then incubated with antibodies against CD147 (R&D Systems, MN, United States, AF772), NLRP3 (R&D Systems, MAB7578), Bcl-2 (Huabio, Hangzhou, China, M1206-4), Bax (Huabio, ER0907), p65 (Proteintech, Wuhan, China, 10745-1-AP), p-p65 (Cell Signaling Technology, CA, United States, 3033S), Lamin B (Proteintech, 66095-1) or α-Tubulin (Proteintech, 66031-1) in TBST. After incubation of membranes with secondary antibodies, protein bands were visualized with ECL solution (Beyotime Biotechnology, Shanghai, China, P0018FS). Image analysis procedures were performed with Carestream Molecular Image software.
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2

Comprehensive Protein Analysis in Treated Cells

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Protein was extracted from compound-treated cells. Protein was separated by electrophoresis of the sodium dodecyl sulphate-polyacrylamide gel (SDS-PAGE) and transferred to the polyvinylidene fluoride membrane (PVDF). The membranes were incubated overnight at 4 °C with primary antibodies after blocking in 5% BSA/TBST buffer for 2 h. The following primary antibodies were used at 1:1000: PD-L1 (ABCAM, cat. ab213524), AKT (CST, cat. 4691 T), p-AKT (beyotime, cat. AF1546), mTOR (CST, cat. 2972S), p-mTOR (CST, cat. 2971S), Bcl-2 (HuaBio, cat. HN0921), Caspase 3 (CST, cat. 9662S), c-Caspase 3 (beyotime, cat. AC033), PARP (CST, cat. 9542 T), c-PARP (CST, cat. 9541 T), GAPDH (beyotime, cat. AF1186), and β-actin (CST, cat. 4970 T).
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3

Western Blot Analysis of Protein Expression

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Protein samples were separated via sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred to polyvinylidene difluoride membranes (Merck Millipore). The membranes were blocked with 5% nonfat milk (BD Biosciences) in Tris-buffered saline with 0.1% Tween 20, washed, and incubated with primary antibodies against estrogen receptor (ER)-α (8644; CST), progesterone receptor A/B (PR) (8757; CST), HER2 (AB16899; Abcam), CDK6 (3524-1; EPITOMICS), CyclinE1 (1655-1; EPITOMICS), ZO1 (8193; CST), E-Cadherin (3195; CST), ZEB1 (3396; CST), N-Cadherin (13116; CST), Vimentin (5741; CST), Snail (3879; CST), Slug (9585; CST), Claudin-1 (13255; CST), β-catenin (8480; CST), EGFR (4267; CST), p-EGFR (Y1068) (3777; CST), Caveolin (3267; CST), STAT3 (bs-1141R; BIOSS), p-PTEN (S380) (9551; CST), Akt (4691; CST), p-Akt (T306)(13038; CST), Bcl-X (1018-1; EPITOMICS), Bcl-2 (0407-7; Hua Bio) and β-actin (sc-477748; Santa Cruz). The membrane was incubated with diluted horseradish peroxidase (HRP)-conjugated secondary antibody (1:2000, CST), treated with a Pico ECL kit (FDbio) and imaged with an Amersham Imager 600 (GE Healthcare).
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4

Western Blot Analysis of Myocardial Proteins

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Myocardial tissue and cell suspension was lysed by RIPA lysis buffer (MB-030-0050, Multi Sciences Biotech, Hangzhou, China). BCA Protein Assay Kit (23225, Thermo Fisher, USA) was adopted to determine protein concentrations. After equal quantities, total proteins were separated in SDS-PAGE gel (4-20%, ACE Biotechnology, Xiangtan, China), and the bands were transferred onto PVDF membranes (03010040001, Merck, USA). After blocked with 5% skimmed milk and washed with tris-buffered saline containing 0.1% tween-20 (TBST), protein bands were blotted with primary antibodies at 4° C overnight. After washing with TBST, protein bands were blotted with HRP conjugated secondary antibody and monitored using ECL buffer (32209, Thermo Fisher). Quantifications of western blotting were measured with Fusioncapt advance software. Antibody information: Bax (HUABIO, USA, ET1603-34, 1:1000), Bcl2 (HUABIO, ET1702-53, 1:1000), Cleaved-caspase3 (HUABIO, ET1608-64, 1:1000), IL-10 (Servicebio, Wuhan, China, GB11108, 1:1000), TLR4 (Servicebio, GB11519, 1:1000), α-SMA (Servicebio, GB111364, 1:1000), MMP-9 (Abcam, Cambridge, UK, ab76003, 1:1000), Collagen I (Abcam, ab34710, 1:1000), GAPDH (CST, USA, 5174S, 1:1000). HRP-conjugated secondary antibody (HUABIO, HA1001, and HUABIO, HA1006, 1:50000).
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5

Protein Expression Analysis by Western Blotting

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To investigate the associated protein activation, Western blotting analysis was performed. The protein samples were mixed with sample loading buffer (P0015F, Beyotime, China) and subjected to heat at 95 °C for 5 min before being separated on 10% SDS-PAGE gels, and subsequently transferred onto polyvinylidene fluoride membranes. The used antibodies were: FOXO1 (1:1000, 2880 s, Cell Signaling Technology, USA), VCAN (1:500, ET7107-09, Huabio, China), BAX (1:3000, ET1603-34, Huabio, China), BCL-2 (1:3000, ER0602, Huabio, China), neuronal nuclear antigen (NeuN; 1:1000, 36,662, Cell Signaling Technology, USA), MBP (1:1000, PA1-10,008, Thermo Scientific, USA). Finally, the blots were scanned and analyzed by ImageJ software. The normalized band intensities against the corresponding housekeeping protein β-actin (1:1000, 3700 s, Cell Signaling Technology, USA) were calculated for precise comparison.
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6

Western Blot Analysis of Autophagy and Apoptosis Markers

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Cells were harvested and lysed (0 °C, 30 min) in RIPA reagent (Beyotime, China), containing PMSF and a protease and phosphatase inhibitor cocktail (Roche, Switzerland). The protein concentration of each sample was measured by the BCA Protein Assay kit (Thermo, America). Equal amounts of proteins (30 µg each) were incubated at 95 °C for 10 min in an SDS buffer. Proteins were separated by 12% SDS-PAGE and transferred to a polyvinylidene fluoride membrane (Millipore) after incubation overnight with primary antibodies against TLR4 (1:1000; Affinity, America), LC3B (1:1000; Abcam, America), p62 (1:1000; CST), ATG5 (1:1000; Sigma, Germany), p-p65 (1:1000; CST), p-p38 (1:1000; CST), BAX (1:500; CST), BCL-2 (1:500; HUABIO), Caspase-3 (1:1000; Proteintech, America), Caspase-8 P18 (Santa Cruz, America), and GAPDH (1:5000; Proteintech, America) at 4 °C. The membranes were incubated with a horseradish peroxidase-conjugated secondary antibody (1:2000; Beyotime, China) and were then visualized using chemiluminescence (Thermo, America) and quantified by ImageJ software (National Institutes of Health; version 1.45).
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7

Western Blot Analysis of Apoptosis and Autophagy

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After 48 h of HEA treatment, SGC-7901 cells were collected, total protein was extracted, and Western blot analysis was performed as previously described [13 (link)]. Primary rabbit antibodies against β-actin (1:3000), AIF (1:2000), Bcl-2 (1:2000), and Bax (1:2000) were purchased from HUABIO (Hangzhou, China). Primary antibodies against caspase-3 (1:2000), caspase-8 (1:2000), caspase-9 (1:2000), caspase-12 (1:1000), cytochrome C (1:500), poly(ADP-ribose) polymerase (PARP) (1:2000), cleaved-PARP (1:2000), and p53 (1:1000), were purchased from Cell Signaling Technology (Beverly, MA, USA). Primary antibodies against ATF4 (1:1000), CHOP (1:500), p62 (1:1000), and Beclin1 (1:1000) were obtained from Proteintech (Rosemont, IL, USA). Primary antibodies against LC3 (1:500), ATG5 (1:1000), and ATG12 (1:1000) were obtained from MBL (Nagoya, Japan). Anti-rabbit lgG horse-radish peroxidase-conjugated secondary antibody (1:3000) was purchased from Abcam (Cambridge, MA, USA).
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8

Ferroptosis Regulation and Detection

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TA, FeCl3·6H2O and H2O2 were purchased from Sigma-Aldrich (St. Louis, MO, USA). DOC and calcein acetoxymethyl ester (calcein-AM)/propidium iodide (PI) detection kits were obtained from Dalian Meilun Biotech Co., Ltd. (Dalian, China). Methylene blue (MB), ethanol, hydroxylamine hydrochloride, tetrazolium (MTT) 1,10-phenanthroline monohydrate, GSH, vitamin E (VE), glutamate (Glu), cysteine (Cys), Tween 20, and phosphate buffer solution (PBS) were bought from Aladdin-Reagent Co., Ltd. (Shanghai, China). Deferoxamine mesylate (DFO), ferrostatin-1 (Fer-1), necrostain-1 (Nec-1), 3-methyladenine (3-MA), and benzyloxycarbonyl-Val-Ala-Asp(OMe)-fluoromethylketone (APO) were acquired from MedChemExpress (Monmouth Junction, NJ, USA). Chlorin e6 (Ce6) was purchased from Shanghai Yuanye Bio-Technology Co., Ltd. (Shanghai, China). Primary monoclonal antibodies (Bax, Bcl2, caspase 9, GPX4, COX2, XCT, and SLC3A2) and secondary antibodies were purchased from HuaBio (Huangzhou, China).
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9

Murine Ovarian Tissue and KGN Cell Protein Analysis

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Murine ovarian tissue and drug-treated KGN cells were subjected to protein extraction in RIPA lysis and extraction buffer (Thermo, USA). Protein concentrations were quantified using the BCA protein assay kit (Thermo, USA). The protein samples were fractionated by SDS‒PAGE and then transferred to PVDF membranes (Millipore, USA). Subsequently, the membrane was blocked using 5% skim milk for 1 h. Then, the sections were incubated overnight at 4 °C with the corresponding primary antibodies, including pATM, PGC-1α, TERF2 (ABclonal, China), SIRT1, p53 (Proteintech Group, China), Bax, Bcl-2, and β-actin (HuaBio, China), and then probed with secondary antibodies. Protein chemiluminescence was detected using the ECL chemiluminescence reagent (Thermo, USA). Finally, exposure was performed using an exposure device.
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10

Protein Expression Analysis of Cell Lysates

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Cell lysates were prepared using radioimmunoprecipitation assay (RIPA) buffer (Beyotime, China, P0013B). Total protein was quantified by BCA protein assay (Bio‐Rad, Berkery). Each sample was adjusted to equal amount of protein using 5X loading buffer for loading. The samples were separated by SDS‐PAGE, transferred to a polyvinylidene fluoride membrane, and immunoblotted with the following antibodies: GDF11 (DGDF80, R&D Systems,Emeryville, CA,USA), HGF (ab83760, Abcam, USA), VEGFR1 (ET1605‐11,Huabio,China), CD31 (#77699, Cell Signalling TechnologyBoston,MA, USA), VEGFR2 (#9698, following Abs are all from Cell Signalling Technology,USA), phospho‐p44/42 (Thr202/Try204 phospho‐ERK1/2,#4370), p44/42 MAPK (Erk1/2,#4696), BCL2 (#2827), BAX (#14796), Cleaved Caspase3 (#9661), phospho‐Smad2 (Ser465/Ser467,#18338), phospho‐Smad3 (Ser423/425, # 9520), Smad2(#5339), Smad3(#9523), anti‐β‐actin (#3700), EIF4E (R1512‐8,Huabio, China), Phospho‐eIF4E (S209) (ET1608‐66,Huabio, China) and VEGF ( ER30607,Huabio, China),at 4°C overnight. After incubation of the membranes with peroxidase‐conjugated secondary antibodies (Cell Signalling Technology,USA), bands were visualized using enhanced chemiluminescence reagents (Bio‐Rad,Los Angeles, CA,USA).
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