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30 protocols using murine egf

1

Hepatocyte Culture Optimization Protocol

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Rat tail type I collagen, Transwell inserts (0.9 cm2 cell culture area, 1.6 × 106 pores/cm2), 12-well polystyrene tissue culture dishes, 12-well polycarbonate plates and Transwell inserts (1.12 cm2 cell culture area, 1.6 × 108 pores/cm2) were purchased from Corning (Corning, NY). SB202190 was from Selleckchem (Houston, TX). Collagenase (type IV) was purchased from Worthington Biochemicals (Lakewood, NJ). Y-27632 and N-[N-(3,5-difluorophenacetyl)-L-alanyl]-S-phenylglycine t-butyl ester (DAPT) were purchased from ApexBio Technology (Houston, TX). Human collagen (type I) was obtained from Advanced Biomatrix (Carlsbad, CA). The ALP assay kit was from AbCam (Cambridge, MA). Gastrin was from Anaspec (Freemont, CA). UGT-Glo™ Assay and P450-Glo™ CYP3A4 Assay were obtained from Promega (Madison, WI). N-acetyl cysteine was purchased from MP Biomedicals (Santa Ana, CA). Murine EGF was procured from Peprotech (Rock Hill, NJ). Primocin was purchased from InvivoGen (San Diego, CA). Nicotinamide, L-alanine p-nitroanilide, fluorescein diacetate, loperamide, zafirlukast, cobalt chloride, potassium phosphate buffer, bovine serum albumin, and A83–01 were acquired from Sigma-Aldrich (St. Louis, MO). All other reagents and Bicinchoninic Acid (BCA) Protein Assay Kit were purchased from Thermo Fisher Scientific (Waltham, MA).
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2

Generation of All-iPSC Derived NSCs

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All animal procedures were performed according to the National Institute of Biological Sciences Guide for the care and use of laboratory animals. neural stem cells (NSCs) were isolated from a newborn all-iPS mouse, which was generated from an iPSC line through tetraploid complementation [26] (link), [27] . Plasmid preparation, and the procedure of iPS derivation were performed according to the methods described previously [26] (link), [28] (link).
Single cells were picked from digested NSCs and plated individually on a 96-well dish with media of DMEM/F12 (Life Technologies) supplemented with 1 × B27 (Life Technologies), 20 ng/ml murine EGF (Peprotech), and 20 ng/ml bFGF (Peprotech). Neurospheres, that were formed approximately 5–6 days later, were then digested and Tet-on induced on the feeder cells with regular embryonic stem cell (ESC) media supplemented with 1 μg/ml doxycycline and 10 ng/ml ascorbic acid. Approximately 15–18 days later, the ESC-like spheroids were mechanically picked up and further cultured into iPSC lines. IPSC culture medium contained DMEM (Life Technologies) supplemented with 15% fetal bovine serum (FBS), 1 mM L-glutamine, 0.1 mM mercaptoethanol, 1% nonessential amino acids, and 1000 U/ml leukocyte inhibitory factor (LIF) (all from Chemicon). Culture dishes were kept at 37 °C in a humidified atmosphere of 5% CO2 in air.
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3

Intestinal Organoid Generation from Mouse Crypts

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To generate intestinal organoids (IOs), intestinal crypts were isolated from the mouse small intestine as previously described [53 (link),54 (link)]. In brief, the harvested mouse small intestine was longitudinally opened and villi were removed by gentle scraping with a glass coverslip. The tissue was cut into small pieces (2–3 mm) then incubated in gentle cell dissociation solution (Stemcell Technologies, Vancouver, BC, Canada) for 20 min at room temperature followed by vigorous shaking to dislocate the crypts. After the removal of the intestinal segment, the supernatant containing crypts was washed with PBS at 400× g for 5 min at 4 °C to pellet the crypts. A total of 300 crypts mixed with 25 μL Matrigel (at 1:1 ratio) were seeded onto one well of 24 well plates. Organoids were kept in growth media composed of DMEM/F-12 (Gibco, Grand Island, NY, USA), N2 (Gibco), B27 (Gibco), 1 mM N-acetylcysteine (Sigma-Aldrich), 100 ng/mL Noggin (Peprotech, Rocky Hill, NJ, USA), 100 ng/mL murine EGF (Peprotech) and 10% of R-spondin conditioned media. Media change was done every 2–3 days and the subculture of organoids was conducted every 5–7 days.
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4

Collagen I Remodeling Assay

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Collagenase type IA (Sigma, St. Louis, MO, USA), Collagen I from rat tail (Corning, Corning, NY, USA), trypsin inhibitor (Gibco, Thermo Fisher Scientific, Waltham, MA, USA), IMDM (Gibco, Thermo Fisher Scientific), FBS (#F7524; Sigma), preactivated recombinant MMP9 (Sigma), murine EGF (PeproTech, Rocky Hill, NJ, USA), vorapaxar (Adooq Bioscience, Irvine, CA, USA), p1pal‐12 (palmitate‐RCLSSSAVANRS‐NH2; GL Biochem, Shanghai, China), 10058‐F4 (c‐Myc inhibitor; Selleck Chemicals, Houston, TX, USA), ActinGreen 488 ReadyProbes Reagent (Thermo Fisher Scientific), Dolichos Biflorus Agglutinin (DBA)‐rhodamine (RL‐1032; Vector Laboratories, Burlingame, CA, USA).
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5

Tasquinimod Modulates Stromal Cells In Vitro

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For in vitro studies using Tasquinimod, 20,000 Gli1+ tdTom+ stromal cells were seeded per well in a 6-well plate, in aMEM supplemented by 20% FCS, 1ng/ml bFGF (Peprotech, #450-33), 5 ng/ml murine EGF (Peprotech #315-09). At 24 and 48 h after seeding, cells were treated with recombinant TGF-β (10ng/ml, Invivogen) or PBS control, followed by Tasquinimod treatment (50uM) or DMSO control. For confocal imaging of in vitro Tasquinimod experiments, Gli1+ tdTom+ stromal cells (20,000 cells/well in 6-well plate) were cultured on glass coverslips and treated as described above. At 72 h post-seeding, cells were fixed in 4% paraformaldehyde for 10 min at room temperature. Cells were stained with mouse primary antibody αSMA-FITC (1:100, Sigma, F3777), counterstained with DAPI (4′,6′-′diamidino-2-phenylindole) and mounted in Prolong Diamond. Images were obtained by confocal microscopy on a Leica SP8 microscope.
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6

Expansion of Sorted Murine Cells

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Sorted cells were cultured in alpha-MEM, 10% FCS, 1% Penicillin/Streptomycin, 1ng/ml murine bFGF (Peprotech, #450-33), 5ng/ml murine EGF (Peprotech #315-09) in a 6-well plate. Twice a week cells were counted and replated in the same concentration (20.000 cells/well).
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7

Culturing T47D, 4T1, and HC11 Cell Lines

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T47D (HTB-133, ATCC) and 4T1 (CRL-2539, ATCC) cells were cultured in RPMI 1640 supplemented with 2 mM L-glutamine and 10% FBS. HC11 (kind gift from B. Groner, Georg-Speyer-Haus Frankfurt, Germany) cells were maintained in RPMI 1640 supplemented with 2 mM L-glutamine, 10% FBS, 5 µg/ml human recombinant insulin and 10 ng/ml murine EGF (Peprotech). Cells were maintained in their respective medium at 37°C and 5% CO2. No further authentication was performed for the cell lines. For experiments, assay medium consisting of RPMI 1640, 2 mM L-glutamine and 10% FBS was used for all cell lines. All cell lines were tested mycoplasma negative.
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8

Gefitinib and murine EGF treatment

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Gefitinib was purchased from LC Laboratories (cat #G-4408) and diluted for oral gavage in Tween-80 (1% v/v), carboxymethylcellulose (0.1% w/v), and sucrose (1% w/v) to a working concentration of 40 mg/ml. Mice were gavaged daily with a volume of 0.1 ml (4 mg dose, equivalent to ~200 mg/kg). Murine EGF was purchased from Peprotech (cat #315-09) and diluted to a working concentration of 5 µg/ml in sterile 0.9% NaCl for injection. A daily volume of 0.2 ml (1 µg) was used intraperitoneal injections.
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9

Acinar Cell Culture and Imaging

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Collagen‐embedded acinar cells were cultured in IMDM containing 1% FBS, 0.1 mg·mL−1 trypsin inhibitor, and 1 µg·mL−1 dexamethasone. According to a previously described protocol for ADM [17 (link)], acinar cells were treated with 50 ng·mL−1 murine EGF (PeproTech) or 1 ng·mL−1 recombinant MMP9 for 5 days. At the end of the experiment, one batch of cells was visualized with the phase‐contrast channel of the EVOS FL cell imaging system (Thermo Fisher Scientific) at 20× magnification, after which cells were used to isolate RNA. The other batch of cells was fixed with 4% formalin and permeabilized with 0.2% Triton‐X (Sigma). For fluorescence imaging, F‐actin was stained with Alexa488‐conjugated phalloidin (ActinGreen 488 ReadyProbes Reagent; Thermo Fischer Scientific), and ductal structures were stained using rhodamine linked DBA (Dolichos Biflorus Agglutinin; Vector Laboratories). After staining, cells were washed with PBS and imaged with the Yellow Fluorescence (YFP) and Texas‐Red channels of the EVOS FL cell imaging system (Thermo Fisher Scientific) at 20× magnification.
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10

Culturing and Passaging Liver and Intestinal Organoids

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Liver and intestinal organoids were cultured and passaged according to previously described protocols12 (link),20 (link). In short, liver organoids were plated in matrigel (Corning) and maintained in liver expansion medium (EM), consisting of AdDMEM/F12 (GIBCO) supplemented with 2% B27 without vitamin A (GIBCO), 1.25 mM N-Acetylcysteine (Sigma), 10 mM Nicotinamide (Sigma), 10 nM gastrin (Sigma), 10% RSPO1 conditioned media (homemade), 50 ng/ml EGF (Peprotech), 100 ng/ml FGF10 (Peprotech), 25 ng/ml HGF (Peprotech), 5 mM A83-01 (Tocris), and 10 mM FSK (Tocris). SI organoids were plated in matrigel and maintained in SI EM, consisting of AdDMEM/F12 supplemented with 50% WNT3A-, 20% RSPO1-, and 10% NOG(gin)-conditioned medium (all homemade), 2% B27 with vitamin A (GIBCO), 1.25 mM N-Acetylcysteine, 10 mM Nicotinamide, 50 ng/ml murine-EGF (Peprotech), 500 nM A83-01, and 10 mM SB202190 (Sigma). The medium was changed every 2–4 days and organoids were passaged 1:4 –1:8 every week. After thawing, organoids were passaged at least once before electroporation.
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