The largest database of trusted experimental protocols

10 protocols using ab11939

1

Quantitative Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blotting was performed as described previously (9 (link)). Antibodies against VEGFA (cat. no. ab46154; 1:1,000; Abcam, Cambridge, MA, USA), VEGFR2 (cat. no. ab11939; 1:500; Abcam), VEGFR2 (phosphoS473; cat. no. ab5473; 1:800; Abcam), CD31 (cat. no. ab28364; 1:1,000; Abcam) and β-actin (cat. no. 60008-1-Ig; 1:2,000; ProteinTech Group, Inc.) were used. The proteins were detected using the ECL Chemiluminescence Detection kit (EMD Millipore) and quantitated with Image Studio Digits Ver 4.0 (LI-COR Biosciences, Lincoln, NE, USA). The signal intensities of all target proteins were normalized against β-actin signals.
+ Open protocol
+ Expand
2

Ellagic Acid Modulates Liver Protein Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Following treatment with ellagic acid, liver tissue samples were acquired and homogenized for 10 sec at 12,000 × g for 10 min at 4°C. Total protein was measured using a BCA assay reagent (Beyotime Institute of Biotechnology), and then 50 µg protein was subjected to 10–12% SDS-PAGE and electrotransferred onto a polyvinylidene difluoride membrane (BD Biosciences, San Jose, CA, USA). The membrane was blocked in 5% non-fat milk in phosphate-buffered saline (PBS; pH 7.4) for 2 h, and subsequently incubated overnight at 4°C with the following primary antibodies: Anti-inducible nitric oxide synthase (iNOS; 1:400; sc-649; Santa Cruz Biotechnology, Inc., Dallas, TX, USA), anti-vascular endothelial growth factor (VEGF; 1:500; sc-13083; Santa Cruz Biotechnology, Inc.), anti-VEGF receptor 2 (VEGFR2; 1:3,000; ab11939; Abcam, Cambridge, UK) and β-actin (1:500; sc-7210; Santa Cruz Biotechnology, Inc.). Next, the membranes were washed with PBS and incubated with horseradish peroxidase-conjugated goat anti-mouse IgG secondary antibody (1:5,000; 7074; Cell Signaling Technology, Inc., Danvers, MA, USA) at room temperature for 2 h. Protein expression in the samples was detected by Amersham ECL Prime western blotting detection reagent (GE Healthcare Life Sciences, Piscataway, NJ, USA) and analyzed using AlphaEase FC (FluorChem FC2) software (Cell Biosciences Inc., Santa Clara, CA, USA).
+ Open protocol
+ Expand
3

Western Blot Analysis of NADPH Oxidase Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein from cells was extracted by lysis and resolved by 8–12% SDS-PAGE. Samples were then electro-transferred onto a polyvinylidene difluoride (PVDF) membrane (Millipore, Boston, MA, USA). PVDF membranes were blocked with 5% BSA or skimmed milk. Target proteins were detected with antibodies against GAPDH (Abcam, ab9485, diluted 1:2500), NOX1 (Abcam, ab78016, diluted 1:1000), NOX2 (Abcam, ab31092, diluted 1:1000), NOX3 (Abcam, ab82708, diluted 1:2000), NOX4 (Abcam, ab133303, diluted 1:2000), NOX5 (Abcam, ab198213, diluted 1:2000), DUOX1 (Abcam, ab178534, diluted 1:5000), DUOX2 (Abcam, ab170308, diluted 1:500), VEGFR-1 (Abcam, ab32152, diluted 1:2000), VEGFR-2 (Abcam, ab11939, diluted 1:1000), VEGFR-3 (Abcam, ab27278, diluted 1:1000), EGFR (Abcam, ab52894, diluted 1:5000), p-EGFR (Abcam, ab40815, diluted 1:2000), PDGFR-α (Abcam, ab203491, diluted 1:1000), PDGFR-β (Abcam, ab32570, diluted 1:10000) and C-Met (Abcam, ab51067, diluted 1:5000) overnight at 2–8 °C, followed by incubation with specific horseradish peroxidase (HRP)-conjugated secondary antibodies (Abcam, ab6721, diluted 1:10,000) for 2 h at room temperature. Bands were visualized by chemiluminescence with enhanced chemiluminescent detection reagents (Millipore, Boston, MA, USA).
+ Open protocol
+ Expand
4

Quantifying Angiogenic and Apoptotic Factors

Check if the same lab product or an alternative is used in the 5 most similar protocols
The total protein of the tumour tissues was extracted using radioimmunoprecipitation assay lysis buffer (Beyotime, Shanghai, China) containing proteinase inhibitor cocktail, and the concentration of protein was determined using a bicinchoninic acid assay. Proteins (50 µg) were separated by 10% sodium dodecyl sulphate-polyacrylamide gel electrophoresis and then transferred onto polyvinylidene fluoride membranes (EMD Millipore, USA). The membranes were blocked with 5% skimmed milk at 4 °C overnight and incubated with primary antibodies against VEGFR2 (1:1,000; ab11939, Abcam), angiostatin (1:2,000; ab2904, Abcam), endostatin (1:500; ab202973, Abcam), Bcl-2 (1:1,000; ab32124, Abcam), and Bax (1:2,000; ab32503, Abcam) at 4 °C overnight. After incubating with sheep anti-rabbit IgG (1:5,000; ab97095; Abcam) at 37 °C for 1 h, protein bands were visualised using the enhanced chemiluminescence system (Thermo Fisher Scientific, Inc.). Protein expression levels were normalised to GAPDH expression (1:10,000; ab181602; Abcam) and quantified using ImageJ software version 1.46 (NIH).
+ Open protocol
+ Expand
5

Protein Extraction and Analysis for Tumor Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tumor tissues were ground in liquid nitrogen and treated with RIPA for 15∼30 min. Then the tissues or cells were ultrasonicated at 5 s × 4 times and centrifuged at 4°C and 10 000×g for 15 min. The supernatant was stored at −20°C. The protein was separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred to PVDF membrane. After block by 5% skim milk for 2 h, the membrane was incubated in primary antibody (1:1000) at 4°C overnight. Next, the membrane was further incubated in secondary antibody (1:1000) at room temperature for 30 min. After washing with phosphate-buffered saline/Tween, the membrane was mixed with a chemiluminescent agent for 1 min and developed. Protein image processing system software and Quantity One software were adopted for scanning and calculation. Antibody: anti-p-VEGFR2 (ab38473, Abcam, USA); anti- VEGFR2 (ab11939, Abcam, USA); anti-PI3K (12402S, Cell Signaling, USA); anti-p-AKT (4060S, Cell Signaling, USA); anti-AKT(9272S, Cell Signaling, USA); anti-Cyclin B1 (ab181593, Abcam, USA); anti-Cyclin A(ab185619, Abcam, USA); anti-CDK1(ab32094, Abcam, USA); anti-Bax (ab32053, Abcam, USA); anti-Bcl-2(ab182858, Abcam, USA); and anti-GADPH(ab9485, Abcam, USA).
+ Open protocol
+ Expand
6

Protein Expression Analysis in Tumor Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
The proteins of tumor tissues were performed by building and construction authority (BCA) kit (Pierce Company). Samples from each group were isolated by SDS-PAGE electrophoresis (Mini-Protean-3, bio-Rad, Hercules, CA, USA) and then transferred to PVDF membrane (Millipore, Massachusetts, USA). Skim milk of 5% was used for sealing in 1 h. After washing with PBS, membranes were incubated with antibodies: anti-VEGF antibody (1:1,500, AF-493-NA, R&D Systems), anti-VEGFR2 antibody (1:1,000, ab11939, Abcam), anti-CD31 antibody (1:800; AF3628, R&D Systems), anti-NF-kB p-p65 antibody (1:1,000, ab86299, Abcam), anti-NF-kB p65 antibody (1:1,000, ab19870, Abcam), anti-p-inhibitor of NF-κB (IκB)α antibody (1:2,000, ab19870, Abcam), anti-inhibitor of NF-κB (IκB)α antibody (1:2,000, Abcam), anti-p-IκB kinase (IKK) antibody (1:2,000, ab17943, Abcam), anti IKK antibody (1:2,000, ab17943, Abcam) and anti-β-actin (1:1,000, ab179467, Abcam) overnight at 4 °C. The membranes were washed with PBS and incubated with IgG-HRP secondary antibody (1:800, ab205719, Abcam) at room temperature for 1 h. Signals detection was performed using ECL luminescent substrate (Thermo Fisher Scientific, Inc., Shanghai, China). Relative expression levels of each protein were normalized to β-actin.
+ Open protocol
+ Expand
7

Analyzing Cardiac Protein Expressions

Check if the same lab product or an alternative is used in the 5 most similar protocols
The expressions of eNOS, TGF-β1, caspase-3, VEGF, and VEGFR2 in heart tissues were assessed by western blot analysis. Briefly, myocardial tissue was cut into tiny fragments. A total of 150–250 μl of lysate was added to each 20 mg tissue, and homogenates were homogenized until completely lysed. The supernatant was collected after centrifugation (4°C, 12000 rpm for 15 min). The proteins were extracted, separated, and transferred onto polyvinylidene difluoride (PVDF) membranes. The membranes were blocked with 5% skimmed milk powder overnight at 4°C. The blots were reacted with antibodies to eNOS (1 : 500, Abcam, Ab50010), TGF-β1 (1 : 800, Abcam, Ab92486), caspase-3 (1 : 500, CST, 14220T), VEGF(1 : 1000, Abcam, Ab46154), and VEGFR2 (1 : 1000, Abcam, Ab11939) overnight at 4°C and then with secondary antibody at 37°C for 1 hour. The grayscale signals of the blots were visualized and then analyzed using image analysis.
+ Open protocol
+ Expand
8

Endometrial Protein Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The endometrial tissues of each group were added with lysate, homogenized, and centrifuged at 1,200 g for 15 min at 4oC. Next, the upper supernatant was collected for SDS-PAGE electrophoresis. The proteins were electrically transferred to the nitrocellulose membrane for blocking with 5% skim milk-PBS solution at room temperature. One hour later, the primary antibodies were added for overnight incubation at 4°C, including VEGF (ab46154, 1 µg/mL), KDR (ab11939, 1 µg/mL), TGF-β1 (ab92486, 4 µg/mL), pSmad3 (ab52903, 1/2000), Smad3 (ab40854, 1/5000), pSmad2 (ab53100, 1/1000), Smad2 (ab40855, 1/2000), Smad4 (ab40759, 1/5000), Smad7 (ab216428, 1/300), MMP-9(ab38898, 1/1000), and β-actin (ab8226, 1 µg/mL) (purchased from Abcam, USA). The secondary antibody crosslinked with HRP was added at room temperature for 1 h after the membrane was rinsed with PBS buffer three times. Blots were then developed by enhanced chemiluminescence (ECL) detection. With β-actin as the loading control, the gray value ratio of target band to reference band was regarded as the relative expression level of proteins.
+ Open protocol
+ Expand
9

Immunocytochemical Staining of MVECs

Check if the same lab product or an alternative is used in the 5 most similar protocols
MVECs were grown on collagen IV/fibronectin-coated tissue-culture ware or 12 mm Costar Transwell filters. Cells were fixed using 3.7% formaldehyde and extracted in acetone (−20°C). Alternatively, they were fixed and permeabilized simultaneously in 80% MeOH, 3.2% formaldehyde, 50 mM HEPES (pH 7.4) (Martins et al., 2013 (link)). Staining was performed as previously described (Turowski et al., 2004 (link)) using antibodies against von Willebrand factor (Dako), VE-cadherin (Martins et al., 2013 (link)), occludin and Cldn5 (Invitrogen), VEGFR1 (sc-31173; Santa Cruz Biotechnology), VEGFR2 (ab11939; Abcam), and P-glycoprotein (clone C219).
+ Open protocol
+ Expand
10

Quantifying VEGF Signaling in Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blot analysis was carried out to analyze the expression of VEGFA (vascular endothelial growth factor A) and VEGFR2 (vascular endothelial growth factor receptor 2) in spleen, liver, BM, and skin. In brief, the total protein of the petrous part of the temporal bone samples was extracted using Radio-Immunoprecipitation Assay (RIPA) protein extraction reagent (Beyotime, Shanghai, China) supplemented with phenylmethylsulfonyl fluoride (Beyotime) at 4°C for 20 min. Samples were then centrifuged at 4°C (15 min, 14,000 × g). The protein concentrations were measured using a bicinchoninic acid (BCA) protein detection kit (Thermo, USA). The lysates were separated by 10% sodium dodecyl sulfate–polyacrylamide gel electrophoresis and then transferred onto a polyvinylidene fluoride membrane. After blocking with 5% bovine serum albumin, the membrane was incubated with primary antibodies raised against VEGFA (Cat. No. ab46154; Abcam; 1:1000), VEGFR2 (Cat. No. ab11939; Abcam; 1:500), and GAPDH (loading control; ZSGB-BIO, Beijing, China). Goat antirabbit antibodies conjugated to horseradish peroxidase were used as secondary antibodies (1:500; SA00001-2, Proteintech, Rosemont, IL, USA), and proteins were visualized using enhanced chemiluminescence (Tanon, Tanon-5200, Shanghai, China). The band intensity was quantified using ImageJ software. Three independent experiments were performed.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!