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30 protocols using avance neo 500

1

Quantification of Cayaponoside C5b in Dic-Ac Phase

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The acquisition of the 1H-NMR spectrum was performed on a Bruker Avance Neo 500 instrument operating at 500 MHz (Bruker, Billerica, MA, USA). To obtain the 1H NMR spectra, the following parameters were used: solvent acetone-d6; temperature: 25 °C; number of scans: 64; receiver gain: auto; acquisition time: 2 min. For quantification, TopSpin Eretic 2 software was used, which was calibrated using ethyl benzene (Bruker, Billerica, MA, USA) (8.16 mM) used as an external standard, using the same parameters described above. In the quantification, the peak area was used, which had the initial and final points of integration done manually. The concentration of Dic-Ac phase used to perform the tests was 20.45 mg mL−1. The experiment was carried out in triplicate. The value of cayaponoside C5b present in the Dic-Ac is expressed in %weight of cayaponoside C5b ± standard deviation/weight of Dic-Ac phase (% w/w).
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2

Synthesis of Novel Organic Compound

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All the chemicals used in the experiment are commercially available, and all chemical reactions follow the synthetic route. Reactions were carried out under argon unless otherwise stated. NMR spectroscopy was performed using a Bruker 500 M NMR instrument (Bruker, AVANCE NEO 500, Germany).
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3

NMR Spectroscopy and Characterization Methods

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NMR spectra were acquired at room temperature on a Bruker Avance Neo 500 spectrometer. The chemical shifts (δ) are reported in ppm and are referenced internally to the solvent signals of CDCl3 (1H, δ = 7.27 ppm; 13C, δ = 77.0 ppm) or externally to CFCl3 (19F, 0.0 ppm). The coupling constants J are given in Hz. In the 1H NMR spectra, the following abbreviations are used to describe the peak patterns: s (singlet), d (doublet), t (triplet), m (multiplet). In the 13C NMR spectra, the nature of the carbons (C, CH, CH2, or CH3) was determined by performing APT or DEPT experiments. The IR spectra were recorded with a Jasco FT/IR-4700 spectrophotometer equipped with an attenuated total reflectance (ATR) accessory. MALDI-TOF mass spectra were recorded on a Bruker Autoflex II spectrometer in positive detection mode, using dithranol as matrix. Melting points (°C) were measured on a Büchi M-565 apparatus and are uncorrected. Elemental analyses were performed in a Thermo Scientific Flash Smart elemental analyzer (Thermo Scientific, Waltham, MA, USA).
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4

Synthesis and Characterization of Novel Compounds

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All commercially available materials and reagents were used without purification unless otherwise indicated. Purification via column chromatography was performed using silica gel (200–300 mesh). The melting points of the target compounds 10a10l and 14a14n were determined using an x-5 micro melting point apparatus, which was uncorrected. The purity and characterization of the target compounds were established using a combination of high-performance liquid chromatography and NMR analytical techniques, and the purity was >95% for all test compounds. NMR spectra (500 MHz for 1H NMR and 125 MHz for 13C NMR spectra) were recorded on a Bruker AVANCE NEO 500 instrument, and were to be determined in CDCl3 or DMSO-d6. Chemical shifts were reported in ppm relative to tetramethylsilane (0.00 ppm) or solvent peaks as the internal reference. Splitting patterns are indicated as follows: s, singlet; d, doublet; t, triplet; m, multiplet. Coupling constants (J values) are given in hertz (Hz). High resolution mass spectrometry was conducted using a UPLC G2-XS QTOF spectrometer (Waters) with the electrospray ionization Fourier transform ion cyclotron resonance technique. The NMR and HRMS spectra of compounds 10a10l and 14a-14n are presented in Figures S3–S80.
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5

NMR and Mass Spectrometry Characterization

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NMR spectra were obtained at the Institut für Anorganische und Analytische Chemie (Universität Münster), using Bruker Avance Neo 500 and Bruker Avance III 400. All measurements were performed at room temperature unless otherwise specified. The 1H-NMR and 13C-NMR chemical shifts (δ) of the signals are given in parts per million and are referenced to the residual proton signal in the deuterated solvent DCM-d2 (1H: 5.32 ppm/13C: 54.0 ppm) or DMSO-d6 (1H: 2.50 ppm/13C: 39.52 ppm). The signal multiplicities are abbreviated as follows: s, singlet; d, doublet; t, triplet; q, quartet; br, broad; m, multiplet.
Exact mass (EM) determination by mass spectrometry (MS) was carried out at the Organisch-Chemisches Institut (Universität Münster) using a LTQ Orbitap LTQ XL (Thermo-Fisher Scientific, Bremen, Germany) with electrospray ionization (ESI). MALDI-TOF mass spectra were taken on Autoflex Speed MALDI-TOF spectrometer with 2-[(2E)-3-(4-tert-butylphenyl)-2-methylprop-2-enylidene]malonitrile (DCTB) as the matrix.
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6

Characterization of Organic Compounds by 13C-NMR

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The 13C nuclear magnetic resonance (13C-NMR) spectra were measured using a Bruker AVANCE NEO 500 spectrometer (Bruker Corporation, Zurich, Switzerland). The 13C-NMR samples were prepared by dissolving 300 µL of samples in 100 µL of acetone-d6. The spectra were recorded with a pulse angle of 90 degrees (12 µs) and a relaxation delay of 2 s. The spectra were taken at 150 MHz with 400 accumulated scans.
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7

Solvent Purification and NMR Spectroscopy

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CH2Cl2 was dried by distillation over CaH2, and n-hexane by distillation over Na, benzophenone and tetraglyme. For NMR, deuterated solvents were dried by adding 3 Å molecular sieves to freshly opened bottles. All dry solvents were stored over 3 Å molecular sieves in a glovebox. Pyridine was redistilled prior to use. All other chemicals were used without further purification. For all synthesis performed in a glovebox, glassware had been dried at 150 °C in an oven, or in vacuo, at least overnight. NMR spectra were recorded on a Bruker Avance Neo 500 MHz spectrometer equipped with a TXO cryogenic probe, or an Agilent MR-400 equipped with an OneNMR probe. Chemical shifts are reported on the δ scale (ppm), with the residual solvent signal as an internal reference; CD2Cl2 (δH 5.32, δC 53.84), CDCl3 (δH 7.26, δC 77.16). Nitromethane (δN 0.0 ppm) was used as an external standard for 15N. To assign the 1H NMR resonances chemical shift (δ), multiplicity, coupling constants (J Hz) and number of hydrogens were considered. 2D spectra (1H,15N HMBC, 1H,13C HSQC, 1H,13C HMBC, TOCSY, and COSY) also aided correct assignment. Multiplicities are denoted as s (singlet), d (doublet), t (triplet), q (quartet), h (heptet), and m (multiplet). MestReNova 12.0.2. was used to process the NMR spectra.
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8

Oligonucleotide-Chromium(III) Complex NMR Study

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Experiments with the oligonucleotide were performed at 283 K in D2O with 50 mM NaCl. Solutions for NMR and other studies were allowed to sit for 24 h after the addition of Cr(III) (0–4 equivalents Cr(III) per oligonucleotide) before being used in the subsequent experiments. One-dimensional 1H spectra were collected on either a Bruker Avance NEO-500 with cryoprobe or AM-500 spectrometers (Billerica, MA) using the zg pulse program with 128 scans. 31P spectra were collected on the AM-500 spectrometer using the zgpg30 pulse program with 2400 scans. The data was then processed in Topspin 3.5pl7 using a Gaussian method. The non-exchangeable proton resonances of the oligonucleotide have been assigned previously [24 ].
Experiments with the synthetic Cr(III) complexes were performed on a Bruker AM-360 spectrometer (Billerica, MA).
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9

Solid-State 13C-NMR Characterization

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The five powders were measured with a Bruker Avance NEO 500 wide bore system (Bruker BioSpin, Rheinstetten, Germany) solid state 13C–NMR spectrometer at the NMR center of the faculty of chemistry University of Vienna. A 4 mm triple resonance magic angle spinning (MAS) probe was used with a resonance frequency for 13C of 125.78 MHz, the MAS rotor spinning was set to 14 kHz. Cross polarization (CP) was achieved by a ramped contact pulse with a contact time of 2 ms. During acquisition 1H was high power decoupled using SPINAL (Bruker BioSpin, Rheinstetten, Germany) with 64 phase permutations. The chemical shifts for 13C are reported in ppm and are referenced external to adamantane by setting the low field signal to 38.48 ppm. The data elaboration was done with the software Top-spin 4.0.6 (Bruker, Billerica, MA, USA) while the calculations of the theoretical chemical shifts were done with the software NMR-Predict developed by the University of Lausanne (Luc Patiny) and the University of del Valle (Julien Wist) [46 (link),47 (link),48 (link)].
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10

Synthesis and Characterization of Sxy and Scap

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Xylan (2.00 g), DCC (6.24 g), and DMAP (1.76 g) were dissolved in DMSO (80 mL). 4.31 g of Sa dissolved in DMSO (40 mL) was added dropwise, and then the mixture was stirred at room temperature (RT) for 24 h. Next, the resulting solution was added dropwise to 95% ethanol (2 L) under ice bath conditions, then the precipitate was collected by centrifugation (6000 g, 5 min) at 4 °C. Finally, the precipitate was resuspended in ethanol (30 mL) and dried in vacuum at 45 °C. Sxy was obtained as white oily solid.
Cap (359.35 mg), Sa (853.44 mg), DCC (680.89 mg), and DMAP (36.65 mg) were dissolved in dichloromethane (20 mL), stirring for 24 h at RT. Then the reaction mixture was filtered by filter paper, and the filtrate was washed and dried in vacuum. Scap was obtained as white powder.
Both compounds were strored at −20 °C until use. The structures of Sxy and Scap were confirmed via 1H NMR (AVANCE NEO 500, Bruker, USA), and the Mw were measured through MALDI-TOF MS (ThermoFisher Scientific, AB SCIEX 5800, USA).
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