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3 protocols using facl4

1

Immunoblotting Techniques for Cellular Protein Analysis

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Immunoblotting was performed as previously described.25 Specific antibodies employed are as follows: LC3 (Novus Biologicals, NB100-2220); p62 (Abcam, ab56416); TRAF2 (Abcam, ab126758); COX IV (Abcam, ab14744); TOMM20 (Sigma, WH0009804M1); VDAC (Cell Signaling Technology, 4661S); PARKIN (Abcam, ab15954); FACL4 (Abcam, ab155282); calreticulin Antibody #2891; VAPB (Thermo Fisher Scientific, A302-894A); IRE1α (14C10) (Cell Signaling Technology, 3294S); GAPDH (Abcam, ab22555); TLR9 (Novus Biologicals, NBP2-24729); actin (Sigma, A2066); PINK1 (MRC PPU products and reagents, S774C [DU17570] and S086D [DU34559]); and α-sarcomeric actin (Abcam, ab52219).
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2

Immunoblotting Analysis of Antiviral Signaling

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Cells were harvested, washed with PBS, and lysed on ice for 30 minutes in lysis buffer (1% CHAPS (Pierce) in PBS containing a protease inhibitor cocktail tablet (Roche)). After centrifugation at 800g for 10 minutes at 4°C to remove debris, lysates were sparated by SDS-PAGE and transferred onto PVDF membranes (Millipore). The membranes were probed using antibodies against viperin (MaP.VIP) [8 (link)], or commercial antibodies to MAVS (Abcam and Santa Cruz), MDA-5 (Cell Signaling Technology), RIG-I (Cell Signaling Technology), calnexin (Enzo), Grp94 (Enzo), FACL4 (Abcam), TFPβ (LifeSpan BioSciences), Tim23 (BD Biosciences), and non-phosphorylated IRF3 and phosphorylated IRF3 (Cell Signaling Technology). Secondary antibodies conjugated to Horse Radish Peroxidase were purchased from Jackson ImmunoResearch. Blots were developed using SuperSignal West Pico Chemiluminescent Substrate (Thermo Fisher Scientific).
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3

Immunoblotting analysis of mitochondrial and metabolic proteins

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Transfected Hepa 1–6 cells were lysed or mice liver tissues were homogenised in RIPA lysis buffer containing protease and phosphatase inhibitors. Lysates (20–40 μg) were separated using SDS-PAGE (6 %–12 %), transferred on nitrocellulose or PVDF membranes and blocked with 5 % BSA followed by incubation overnight at 4 °C with primary antibodies against GRP75 (Cat no. 2799), FACL4 (Cat no. 155282), MFN1 (Cat no. 57602), MFN2 (Cat no. 56889), SIGMA1R (Cat no. 53852), VDAC1 (Cat no. 14734), G6Pase (Cat no. 83690), p-IRS1(S307) (Cat no. 5599), MCU (Cat no. 121499): Abcam, Cambridge, UK; IP3R1/2/3 (Cat no. 85685), PCK1 (Cat no. 12740), FBP1 (Cat no. 59172), p-JNK1/2 (Cat no. 9255), ERK1/2 (Cat no. 4695), p-ERK1/2 (Cat no. 4377), p38 (Cat no. 9228), p-P38 (Cat no. 9216), IRS1 (Cat no. 2390), p-AKT (Ser473, Cat no. 4060) and AKT (Cat no. 4685): Cell Signaling Technology, MA, USA; JNK (Cat no. sc7435), HSC 70 (Cat no. sc7298), β-actin (Cat No. sc81178), vinculin (Cat no. sc73614): SantaCruz Biotechnology, Texas, USA); Pcx (SAB2500845, Sigma, St. Louis, USA) and PACS2 (PA5-72866, Thermo, MA, USA) using specific antibodies. Immunoreactive bands were detected using ECL Chemiluminescence kit (Gbiosciences, USA) vinculin, β-actin or HSC70 were used as loading controls.
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