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13 protocols using arrayscan hcs reader

1

In Vitro Angiogenesis Assay for HUVECs

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At 48 h after siRNA treatment, the HUVECs (4×104 cells/well) in the experimental and control groups were resuspended in endothelial complete medium without serum and seeded onto 96-well plates coated with Matrigel (70 μl). Photomicrographs of the center of each well were obtained following incubation of the cells at 37°C for 48 h. The tubes were stained using a Cellomics Cytoskeletal Rearrangement kit and were analyzed with Cellomics ArrayScan (Cellomics, Pittsburgh, PA, USA). Cell images were acquired with the ArrayScan® HCS Reader (Cellomics, Pittsburgh, PA, USA). Tube formation was assessed by measuring the tube length by using the Image-Pro Plus 6.0 image processing system (Media Cybernetics, Inc., Rockville, MD, USA). Data are expressed as mm/mm2.
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2

ROS Modulation in Lung Cancer Cells

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The effect of AMEAE on the ROS formation in A549 cells was determined by ROS assay. Briefly, treated lung cancer cells with AMEAE at different concentrations in 96-well plates were incubated for 24 h. After the incubation time, the treated cells were stained with dihydroethidium (DEH) at 2.5 μg/mL and Hoechst 33342 (500 nM) dyes for 30 min. Then, cells were fixed with paraformaldehyde (3.5%) for 15 min and washed with PBS twice. The Cellomics ArrayScan HCS reader was used to measure the ROS generation in treated A549 cells.
To further determine the role of ROS generation in AMEAE-induced antiproliferative effect, A549 cells were treated with antioxidants prior to treatment with AMEAE and the cell viability was measured after 24 h. In brief, A549 cells in the exponential phase of growth were supplemented with antioxidants superoxide dismutase (SOD, 300 U/mL) and catalase (400 U/mL) for 1 h prior to AMEAE (20 μg/mL) treatment for 24 h. After incubation time, the cell viability analysis was carried out using a microplate reader (Asys UVM340, Eugendorf, Austria).
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3

Neuronal Differentiation Assays using Cellomics

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The Cellomics Multiparameter Neurite-Outgrowth Kit was used to perform multiple neuronal differentiation assays. According to their protocols, NPCs were plated in a 96-well plate at a concentration of 2 × 104 cells per well, grown in medium in the presence or absence of bFGF (20 ng/ml), and then treated with AG1478 (EGFR tyrosin kinase inhibitor, 10, 20 μM), Cetuximab (EGFR monoclonal antibody, 5, 10 μM), 5-FU (antineoplastic drug, 10, 20 ug/mL), LY294002 (PI3K/AKT inhibitor, 10, 20 μM), and CDP0857 (10, 25 μM) during 24 h. Next, 50 μL of paraformaldehyde 4% was added to each well to fix the cells, and PBS was used to wash the cells. Then, the cells were incubated with 30 μL of primary antibody solution per well for 2 h. The cells were further incubated for 1 h with 30 μL of secondary antibody solution at room temperature. Nuclei were counterstained with DAPI. Cellular screening, data acquisition, and data interpretation were conducted on the ArrayScan HCS Reader (Cellomics Inc., Pittsburgh, PA, USA).
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4

Cell Enumeration via Automated Imaging

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Cells were subcultured in 96-well culture plates at 37°C. The next day, cells were washed three times with RPMI 1640 medium and nuclei were stained with Hoechst 33342 for 10 mins. After washing 3 times in RPMI 1640 medium, the total number of cells were counted by Cellomics Array Scan HCS Reader. The assay was repeated at least three times and the data are presented as the mean ± standard error of the mean.
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5

Quantification of DNA Damage Foci

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Images of stained cells were acquired using a Cellomic ArrayScan VTI using a 20 x 0.40 NA objective. Image analysis was performed using Cellomics ArrayScan HCS Reader. Nuclear staining was used to delineate cells. After background correction, the quantity of nuclear foci was measured. Approximately 400 cells were analyzed in each well. Each time point and cell line was repeated in triplicate. For BRCA1 and BRCA2, cells were considered positive if they had greater than 25 foci. For RAD51 and RPA70, cells were considered positive if they had greater than 10 foci per cell.
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6

Quantifying Cellular RhoG-hepcidin Response

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T-REx™/FPN-V5 cells were plated in 384-well Poly-D-Lysine coated plates (BD) at 15,000 cells/well and induced overnight as described for the BLA screening assay. Cells were treated with compound for 1 h prior to adding 250 nM RhoG-hepcidin for 1 h. Plates were washed and fixed with 4% formaldehyde (Thermo Fisher) and nuclei stained with 1 μg/ml Hoechst nuclear dye (Thermo Fisher). Plates were scanned on Thermo Fisher ArrayScan™ HCS Reader and analyzed with Spot Detector application. A minimum of 300 cells/well were analyzed.
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7

Cell Motility Assay for GBM Cells

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Cell motility was analysed using a high-content screening assay. GBM cells in log phase were seeded into 96-well plates (500 cells/well) and coated with Collagen I and blue fluorescence beads. The cells were cultured in a medium containing the aforementioned concentrations of OMT, TMZ, or 1% DMSO for 10 hours. Cell motility was then measured using the ArrayScan HCS Reader (Thermo Fisher Scientific In, USA) by following the manufacturer's protocol.
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8

Girinimbine Inhibits LPS-Induced NF-κB Activation

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RAW 264.7 cells were cultured in 96-well plates at a density of 5×103 cells/well and pretreated with girinimbine for 24 hours. Following the pretreatment, RAW 264.7 cells were stimulated with LPS (10 ng/mL) for 30 minutes. Control wells received similar treatment conditions expect for girinimbine pretreatment. The cells were then stained using a Cellomics NF-κB activation kit (Thermo Fisher Scientific) according to the kit instructions. RAW 264.7 plates were evaluated on the ArrayScan HCS Reader (Cellomics; Thermo Fisher Scientific). Ratios of cytoplasmic and nuclear factor-kappa B (NF-κB) intensity29 (link) (average intensity of 200 cells/well) were calculated by Cytoplasm to Nucleus Translocation BioAp-plication software (Cellomics, Inc, Pittsburgh, PA, USA).
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9

Quantifying Cytoskeleton Rearrangements

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Cytoskeletal rearrangement kit allows direct measurements of F-actin using a fixed end-point assay based on immunofluorescence detection using Thermo Scientific ArrayScan HCS Reader [41 (link)]. In this experiment, cells were incubated with FMG for 48 h, and stained with fluorescent dyes, including DAPI, Rhodamine phalloidin. Afterwards, plates were sealed and run immediately on the HCS Assay Scan VTI HCS Reader to acquire images. Images were analyzed with HCS software.
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10

Hepcidin Uptake Assay in T-REx™/FPN-V5 Cells

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T-REx™/FPN-V5 were plated in 384-well Poly-D-Lysine coated plates (BD) at 15,000 cell/well and induced overnight as described for RhoG-hepcidin uptake assay. Cells were treated with compound for 1 h prior to adding 250 nM hepcidin for 1 h. Cells were fixed with 4% methanol-free formaldehyde (Thermo Fisher) and stained with 4 μg/ml antibody 38G6-Alexa 647 and 2 μg/ml Hoechst nuclear dye (Thermo Fisher). Plates were scanned on Thermo Fisher ArrayScan™ HCS Reader and analyzed with Spot Detector application. A minimum of 300 cells/well were analyzed.
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