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11 protocols using anti n cadherin

1

Immunofluorescence Staining of EMT Markers

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For EMT markers detection, HCEs were fixed with 3.5% paraformaldehyde, permeabilized with 0.1% Triton X-100, blocked with 2% bovine serum albumin (BSA, sigma, USA), and incubated over night at 4 °C with primary antibodies as following: anti-N-cadherin (1:100, Abclonal, China), anti-E-cadherin (1:100) and anti-vimentin (1:100). After washing with phosphate buffered saline (PBS, Gibco), the cells were incubated for 1 h with fluorescein isothiocyanate (FITC)-conjugated mouse immunoglobulin G secondary antibody (1:200). The stained cells were counterstained with 4′, 6-diamidino-2-phenylindole (DAPI, Invitrogen, USA) and viewed under a consistent fluorescence in situ hybridization (FISH) imager (BX51, Olympus, Tokyo, Japan).
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2

Quantitative Western Blot Analysis of Bladder Proteins

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Total protein samples were retrieved from bladder tissues or cultured cells, and their quantity was assessed by a BCA Protein Assay Kit (Invitrogen) after processing in RIPA lysis buffer supplied with protease and phosphatase inhibitors [20 (link), 21 (link)]. For western blot analysis, a 10% SDS-PAGE gel and 30 μg of proteins were packed and transported to a PVDF membrane. Next, the membranes were blocked for 1 h at room temperature with 5% milk before incubation with primary antibodies: anti-GREM1 (#PK12868; 1:1000; Abmart), anti-E-Cadherin (#A20798; 1:1000; Abclonal), anti-N-cadherin (#A19083; 1:1000; Abclonal), anti-Vimentin (#A19607; 1:1000; Abclonal), anti-p-PI3K (#17366; 1:1000; CST), anti-PI3K (#T40064; 1:1000; Abmart), anti-p-AKT (#4060; 1:1000; CST), anti-AKT (#60203; 1:5000; Proteintech) or anti-GAPDH (#AC001; 1:5000; Abclonal) at 4 °C overnight. The following day, the membranes were incubated with peroxidase-conjugated secondary antibody at room temperature for 1 h, pictured by the chemiluminescence system (ChemiDocTM Touch; Bio-Rad, USA), and assessed with the ImageJ program.
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3

Protein Expression Analysis in Cells

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RIPA buffer (Servicebio, China) was used to extract total protein from tissues or cells, and the protein concentration was determined using a bicinchoninic acid assay kit (Boster, China). Protein samples were subjected to electrophoresis and transferred onto a polyvinylidene fluoride membrane. The protein blots were then incubated with the specified primary antibody overnight at 4 °C, as following: anti-α-SMA, anti-Collagen I, anti-N-cadherin, anti-Fibronectin, anti-E-cadherin, anti-Vimentin, anti-β-actin, anti-LC3, anti-p62 and anti-GAPDH (all from Abclonal, China), anti-TFEB, anti-ATP6V0C, anti-CDKN1A, anti-CCNB1, anti-STX17, anti-SNAP29, anti-VAMP8, anti-DNMT3a and anti-DNMT3b (all from Proteintech, USA), anti-p-CDK1 and anti-DNMT1 (both from CST, USA) antibodies, and subsequently incubated with the appropriate secondary antibody horseradish peroxidase (HRP)-conjugated anti-mouse or anti-rabbit immunoglobulin G (IgG) (SAB, USA) for 1h. Blots were visualized through the enhanced chemiluminescence detection system (Bio-Rad, USA).
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4

Protein Expression Analysis by Western Blot

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Protein was purified and used for western blot analysis as previously described (19 ). The antibodies involved were as follows: mouse anti-BARX2 (Abcam, UK); rabbit anti-E-cadherin, anti-N-cadherin, and anti-Vimentin (ABclonal, China); rabbit anti-β-actin, and anti-rabbit and anti-mouse secondary antibodies (ABclonal). The molecular sizes shown on the immunoblots of BARX2, E-cadherin, N-cadherin, Vimentin, and β-actin were 52, 125, 140, 57, and 43 kD, respectively. Each experiment was performed 3 times.
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5

Western Blot Analysis of ADORA2B Protein

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A549, NCl-H1299, and HBE cells were cultured as previously described (Cell Culture). Total protein was extracted using RIPA buffer (Solarbio, Beijing, China). Protein concentrations were measured using a BCA protein assay kit (Solarbio). Protein extracts (50 μg/well) were separated by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred onto polyvinylidene fluoride membranes. The membranes were blocked with 5% skim milk for 2 h and incubated with anti-β-actin (Bioss, bs-0061R, Beijing, China), anti-ADORA2B (Bioss, bs-5900R), anti-cyclin D1 (ABclonal, A2708), anti-PCNA (Proteintech, 10205-2-AP, Wuhan, China), anti-N-cadherin (ABclonal, A0433), and anti-vimentin (ABclonal, A2584) antibodies overnight. The next day, the membranes were incubated with a HRP-conjugated secondary antibody and goat anti-rabbit IgG antibody (ABclonal) for 1 h. A western blot detection ECL kit (Advansta, Menlo Park, United States) was used to detect protein bands. Fold-changes in ADORA2B protein expression were normalized to those of β-actin.
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6

Investigating Protein Regulation Pathways

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Cycloheximide (HY-12320), MG132 (HY-13259), and paclitaxel (HY-B0015) were provided by MCE. Anti-USP53 (A14353), anti-N-cadherin (A0433), anti-CRKL (A0511), anti-p-CRKL (AP0824), and anti-ubiquitin (A0162) were purchased from Abclonal. Anti-E-cadherin (20874-1-AP) was purchased from Proteintech. Anti-Flag (ab205606) was obtained from Abcam.
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7

Western Blot Protein Expression Analysis

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Cells were harvested and lysed on ice in RIPA buffer (50 mM Tris, 100 mM NaCl, pH 8.0, 10 mM EDTA, pH 7.0, 0.4% v/v Triton X-100, 10 mM nicotinamide) containing protease and phosphatase inhibitors (Beyotime, Shanghai, China). Lysates were centrifuged at 15,000 g at 4 °C for 15 min. Proteins were resolved using SDS–polyacrylamide gel electrophoresis and transferred onto PVDF membrane. Membranes were blocked in 5% milk, incubated with primary antibody at recommended concentration in TBST with 5% BSA overnight at 4 °C, then incubated with fluorescent-tagged secondary antibody at a concentration of 1:15,000 and read using a LI-COR Odyssey infrared imaging system. The primary antibody used were: anti-MACC1, anti-GLUT1, anti-HK2, anti-Ecadherin, anti-Ki67 (Abcam, Cambridge, MA); anti-pAMPK (Thr 172), anti-GAPDH (ImmunoWay, New York, DE, USA); anti-LDHA, anti-Lin28, anti-β-actin and anti-Histone H3 (Proteintech Group, Chicago, IL, USA); anti-caspase 3, anti-bax, anti-Ncadherin (Abclonal, Cambridge, MA, USA); anti-8-OHdG (Japan Institute for the Control of Aging, Shizuoka, Japan). β-actin or Histone H3 was used as a loading control.
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8

Exosomal Protein Expression Analysis

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Cells and exosomes were lysed and collected in a protein lysate, and the concentration was measured using a BCA kit (Thermo Fisher Scientific, 23327). Protein samples (30 μg) were electrophoresed, transferred to a nylon membrane and blocked with a blocking buffer. Finally, the cells were incubated with the primary antibody at 4 °C overnight. The antibodies used were anti-HMGB3 (cat:D160490, Sangon Biotech, China), anti-flotillin-1 (cat:ab41927, Abcam, USA), anti-actinin-4 (cat:ab108198, Abcam, USA), anti-Alix (cat:ab186429, Abcam, USA), anti-CD9 (cat:ab92726, Abcam, USA), anti-GAPDH (cat:10494-1-AP, Proteintech, China), anti-E-cadherin (cat:A3044, ABclonal, China), anti-Vimentin (cat:10366-1-AP, Proteintech, China), anti-N-cadherin (cat:A3045, ABclonal, China), anti-HMGB1 (cat:10829-1-AP, Proteintech, China), anti-HMGB2 (cat:14597-1-AP, Proteintech, China) and anti-HMGB4(cat:12787-1-AP, Proteintech, China). Following incubation with a goat anti-rabbit secondary antibody, the immunoreactive proteins were detected with ECL western blotting detection reagents (Millipore, WBKLS0500).
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9

Western Blot Analysis of Cell Lines

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HT29 and CT26.WT were cultured in a six-well plate for 48 h; total protein was extracted using RIPA buffer (Servicebio, G2002, China) containing protease inhibitors (Servicebio, G2006, China) and quantified using BCA kit (Thermo Fisher Scientific, USA). For each sample, 25 μg total protein was separated by 10% SDS-PAGE and transferred to a PVDF membrane using a wet transfer blotting system (BioRad, Hercules, CA), antibodies such as anti-IRF-1 (Cell Signaling Technology, #8474, USA), anti-IRF-2 (Abcam, ab1274744, USA), anti-E-cadherin (ABclonal, A3044, China), anti-N-cadherin (ABclonal, A0433, China), anti-Vim (ABclonal, A11423, China) were used for western blotting; anti-histone (Abcam, USA) was used as an endogenous control.
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10

Western Blot Analysis of Protein Expression

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RIPA lysis buffer (Sangon Biotech) was used for protein extraction. Proteins from cell lysates were separated by sodium dodecyl sulfate (SDS) polyacrylamide gel electrophoresis (6-20%) and then transferred to PVDF membranes. The membranes were blocked with 5% non-fat milk for 2 h at room temperature and incubated with primary antibodies overnight at 4°C. The membranes were then incubated with horseradish peroxidase conjugated secondary antibodies for 1 h at room temperature. The chemiluminescent signals were detected using ECL reagents. Primary antibodies used in this study: anti- Aly/Ref (ab202894) were from abcam, anti-EGFR (4267), anti-STAT3 (9139), anti-p-STAT3 (9145), anti-ERK (4695), anti-p-ERK (8544), anti-AKT (4691S), and anti-p-AKT (4060) were from Cell Signaling Technology (CST). Anti-N-cadherin (A3045) and anti-Snail (A4794) were from Abclonal, while anti-E-cadherin (sc-8426), anti-Slug (sc-166476), and anti-Vimentin (sc-6260) were from Santa Cruz Biotechnology (SCBT).
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