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7 protocols using casp3

1

Protein Extraction and Western Blot Analysis of Osteosarcoma Cells

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We extracted total cellular protein from osteosarcoma cells using RIPA lysis buffer with 1 mM PMSF and determined their concentrations with the BCA Protein Assay Kit (Beyotime, Shanghai, China). Next, proteins were separated by PAGE and transferred to PVDF membranes. After blocking with skim milk (5%, w/v) for 2 h at room temperature, membranes were incubated with the following primary antibodies (1: 1,000) overnight at 4°C: RASGRP2 (ABclonal, A15381), KCNJ3 (Abcam, ab129182), ACTG2 (Abcam, ab231802), CASP3 (Proteintech, 19677-1-AP), Bcl-2 (Proteintech, 26593-1-AP), Bax (Proteintech, 50599-2-Ig), and GAPDH (ABclonal, AC001). Membranes were then incubated with HRP-labeled IgG secondary antibody (1:2000, Beyotime, A02080) for 2 h at 25°C. Protein bands on the membrane were visualized using the ECL Plus kit (Meilunbio). Finally, the band intensity was quantified via Image Lab 6.1 software (BioRad, Hercules, CA, USA).
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2

Western Blot Analysis of Signaling Proteins

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After extraction of total and nuclear proteins, western blotting was performed with primary antibody against JNK (1:1000, Cell Signaling Technology), phospho-JNK (1:1000, Cell Signaling Technology), ERK1/2 (1:1000, Proteintech), phospho-ERK1/2 (1:1000, Cell Signaling Technology), FOXO1 (1:1000, Proteintech), BAX (1:1000, Proteintech), CASP3 (1:1000, Proteintech), histone H3 (1:5000, Proteintech) and glyceraldehyde-3-phosphate dehydrogenase (GAPDH, 1:5000, Proteintech) as described previously 16 (link).
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3

Western Blot Analysis of Apoptosis Markers

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HeLa cells were lysed in 80 µL RIPA buffer (Beyotime, Shanghai, China) containing 0.8 µL 1 mM fluoride, and the protein concentration of each sample was determined using the BCA Protein Assay Kit (Bioss, Beijing, China). Proteins (20 µg) were boiled at 95 °C for 5 min, followed by separation by 15% SDS–PAGE. After electrophoresis, the proteins were electrophoretically transferred to PVDF membranes at 100 mA for 90 min. The membranes were blocked with 5% nonfat milk for 1 h at room temperature and incubated overnight at 4 °C with the following primary antibodies: CASP3, BCL−2, beta Actin (β−actin) (Proteintech Group, Inc., Chicago, IL, USA). The catalog numbers are 66470-2-Ig,60178-1-Ig, and 66009-1-Ig. Next, the membranes were treated for 1 h at room temperature with horseradish peroxidase (HRP)-conjugated secondary antibody (Proteintech Group, Inc., Chicago, IL, USA). The catalog number is SA00001-1. The membranes were visualized with enhanced chemiluminescence solution (Biosharp, Beijing, China) (A liquid:B liquid = 1:1) using an Amersham ImageQuant 800 system (Cytiva, Tokyo, Japan).
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4

Protein Extraction and Western Blot Analysis

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Proteins from myocardial and renal tissues were extracted with lysis buffer (Keygen, China) supplemented with phenylmethylsulfonyl fluoride, phosphatase inhibitors, and protease inhibitors. Equal amounts of the protein samples were loaded on 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and then transferred onto a nitrocellulose filter membrane (GE Healthcare Life Sciences, UK). After blocking in 5% bovine serum for 2 h, the membranes were incubated at 4°C overnight with primary antibodies against caspase 3 (CASP3; 1:1,000, Proteintech, USA), albumin (ALB; 1:1,000, Affinity, USA), epidermal growth factor receptor (EGFR; 1:1,000, Affinity, USA), annexin A5 (ANXA5; 1:1,000, Proteintech, USA), peroxisome proliferator activated receptor γ (PPARG; 1:1,000, Proteintech, USA), and GAPDH (1:1,000, Proteintech, USA). Then the membranes were washed 3 times with Tween 20/Tris-buffered saline and incubated with the secondary antibody (LI-COR Biosciences, USA) for 2 h at room temperature. After washing 3 times with Tris-buffered saline, the fluorescence signal of the secondary antibody could be detected by the Odyssey fluorescence imaging system (LI-COR Biosciences, USA).
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5

Neuroprotective Effects of Rapamycin

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NBP (C₁₂H₁₄O; purity, 99.98%), rapamycin, H&E staining kit, DAB developer, and pentobarbital sodium were provided by Solarbio Science & Technology (Beijing, China). The primary antibody against CDH5 was acquired from Boster Biological Technology (A02632-2; Hangzhou, China). GAPDH, SOD1, MMP9, HO1, CTSD, and CASP3 were acquired from Proteintech Group (60004-1-Ig, 10269-1-AP, 12452-1-AP, 10375-2-AP, 10701-1-AP, 21327-1-AP, and 19677-1-AP; Chicago, United States). Antibodies for p62, CYC, Bax, eNOS, and LC3 were purchased from Cell Signaling Technology (5114T 4272T, 14796, 32027, and 3868; Beverly, MA, United States). HRP-conjugated IgG secondary antibody and FITC-conjugated IgG secondary antibodies were obtained from Affinity Biosciences (s0001, s0002; Jiangsu, China). Other reagents include DAPI solution (Beyotime Biotechnology, Jiangsu, China, a BCA Kit (Thermo Fisher Scientific, Rockford, IL, United States) and an ECL Plus Reagent Kit (PerkinElmer Life Sciences, Waltham, MA, United States) which were used according to manufacturer’s instructions.
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6

Protein Expression Analysis by Western Blot

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Cells were harvested and treated with lysis buffer (RIPA, KeyGEN) on ice, and protein concentration was determined using a BCA Kit (KeyGEN). Comparable amounts of extracts were loaded on SDS–PAGE gels and subjected to electrophoresis. After separation on the gel, proteins were transferred to a PVDF membrane. Membranes were blocked in 2% BSA in TBS‐T for 1 hour, and subsequently incubated overnight, at 4°C, with antibodies against HOXC13 (Santa Cruz, Dallas, TX, USA; sc‐514377; 1:1000), CASP3 (Proteintech, Rosemont, IL, USA; 19677‐1‐AP; 1:1000), PARP (Cell Signaling Technology, Danvers, Massachusetts, USA; 9542; 1:1000) or β‐actin (Cell Signaling Technology, Danvers, MA, USA; 8H10D10; 1:1000). After washing in TBS‐T, membranes were incubated with goat anti‐rabbit or goat anti‐mouse HRP‐conjugated secondary antibodies (both from Abcam; 1:10 000), for 2 hours at room temperature. Blots were visualized using ECL detection (Thermo Fisher Scientific, Waltham, MA, USA). All experiments were repeated at least three times, independently.
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7

Analysis of Cellular Signaling Pathways

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Cells were collected 48 h after transfection and cell lysates were prepared using ice-cold Tris buffer (20 mmol/l Tris; pH 7.5) containing 137 mmol/l NaCl, 2 mmol/l EDTA, 1% Triton X, 10% glycerol, 50 mmol/l NaF, 1 mmol/l DTT, PMSF, and a protein phosphatases inhibitor (Applygen Tech. Beijing, China). For extracellular signalregulated kinase (ERK) signaling analysis, cells were starved with serum-free medium for 24 h after transfection. These cells were then stimulated with medium containing 10% serum for 60 min before collection. To analyze the sensitivity of AZD0156, cells were exposed to UV 20 mJ/cm 2 for 2 h [Citation39] before treatment with 0.5 μM/l AZD0156 or ethanol (control), and cells were collected after 24 h treatment. western blot was performed as described previously [Citation34]. Quantification of blots was performed with Image J.
Primary antibodies were as follows: TMEM176A (Sigma-Aldrich), cleaved CASP3 (Protein Tech Group, IL, USA), Bcl2 (Protein Tech Group), CASP3 (Protein Tech Group), Bax (Protein Tech Group), MMP-2 (Protein Tech Group), MMP-9 (Protein Tech Group), cyclin B1 (Protein Tech Group), CDC2 (Protein Tech Group), ATM (HuaXingBoChuang, China),γ-H2AX (HuaXingBoChuang), p-CHK2 (Zhengneng, China), ERK1/2 (Protein Tech Group), p-ERK1/2 (Cell Signaling Technology, MA, USA), SAR1A (Protein Tech Group) and β-actin (Beyotime Biotech, Nanjing, China).
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