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Image pro plus 3

Manufactured by Media Cybernetics
Sourced in United States, Japan

Image-Pro Plus 3.0 is a powerful image analysis software that provides advanced tools for capturing, processing, and analyzing digital images. It offers a comprehensive set of features for a wide range of applications, including microscopy, materials science, and life sciences.

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45 protocols using image pro plus 3

1

Quantifying Glycogen in Alveolar Epithelial Cells

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Tissues were fixed with 4% paraformaldehyde in phosphate-buffered saline (PBS) for 24 h at 4°C, washed with PBS, dehydrated by an alcohol gradient and embedded in paraffin. Subsequently, 3 µm sections were sliced, followed by deparaffinization and rehydration through xylene, ethanol and water. The antigen retrieval was performed in 10 mM citrate buffer (pH 6.0) at a constant pressure of 20 cm H2O. The tissue sections were stained with either hematoxylin and eosin (H&E) for histological analysis, or PAS reagent (G1281) from Beijing Solarbio Science & Technology Co., Ltd., (Beijing, China) for analyzing the content of glycogen; the content of glycogen in alveolar epithelial cells reflect the maturity of AEC II (20 (link)). The sections were observed and images acquired by microscopy at magnification, ×400. PAS staining of the lung tissues revealed red- or purple-colored glycogen. The images were analyzed by Image-Pro Plus III (Media Cybernetics, Inc., Rockville, MD, USA) to obtain the mean gray value. A total of 3–5 samples/group were analyzed.
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2

Glycogen Content Analysis in Lung Tissues

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The lung tissues were fixed with 4% paraformaldehyde at 4 ˚C overnight, washed with PBS and processed into paraffin blocks. Tissues sections were stained with periodic acid-Schiff (PAS) reagent (Beijing Solarbio Science & Technology Co, Beijing, China) for analyzing the content of glycogen. Positive glycogen staining was visualized in red or purple color. The sections were observed under a light microscope and the images were analyzed by Image-Pro Plus III (Media Cybernetics, Inc., Rockville, MD, USA) to obtain the mean gray value.
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3

Immunofluorescence Assay for NDUFA13

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Cells were fixed with 4% paraformaldehyde for 30 min at room temperature and permeabilized with 0.1% Triton X-100 for 10 min. Subsequently, cells were blocked with 3% bovine serum albumin (Beyotime Institute of Biotechnology) for 2 h at room temperature and incubated with an anti-NDUFA13 primary antibody (1:50; cat. no. ab110240; Abcam) overnight at 4°C. The slides were then washed with phosphate-buffered saline (PBS, Beyotime Institute of Biotechnology) and 0.1% Tween-20 (PBST) and incubated with a Texas Red/Alexa fluor-conjugated secondary antibody for 1 h at room temperature. The slides were mounted using mounting medium, counterstained with 6-diamidino-2-phenylindole (Invitrogen; Thermo Fisher Scientific, Inc.) for 10 min at room temperature and observed using an IX71 microscope (Olympus Corporation; magnification, ×200) and Image Pro Plus 3.0 software (Media Cybernetics, Inc.).
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4

Microscopic Imaging Analysis Protocol

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Images of H&E, immunohistochemical and immunofluorescence staining were captured and analyzed using a CCD camera (Eclipse E600, Nikon, Tokyo, Japan) and Image ProPlus 3.0 software (Media Cybernetics, Sarasota, FL, USA).
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5

Quantifying Adipocyte Morphology in Mice

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Paraffin‐embedded sections (7 μm) of epiWAT were cut on an RM2235 microtome (Leica Biosystems Nussloch GmbH, Nubloch, Germany), stained with hematoxylin and eosin (H&E), and photographed at 200× magnification using an Axio Imager.A2m microscope (Carl Zeiss Microscopy GmbH, Jena, Germany). TissueTek O.C.T.‐embedded sections (7 μm) of the liver were cut on a CM1860 cryostat (Leica), stained with H&E, and photographed at 100× magnification. For adipocyte area determination, images were loaded into Image‐Pro Plus 3.0 software (Media Cybernetics, Rockville, MD). Samples from five animals from each group were analyzed, and at least 100 cells were measured per animal. The minimal number of adipocytes that were measured per group was ~720 (chow‐fed FVB mice), and the maximal number was ~1150 (chow‐fed C57Bl/6J mice).
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6

Ultrastructural Analysis of Myelinated Fibers

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Mice were anesthetized and transcardially perfused with 4% paraformaldehyde and 2% glutaraldehyde (v/v) in 0.1 M PBS. The brain was dissected and dehydrated in a graded series of ethanol (50–100%), then embedded in Epon. Semi-thin sections (0.9 mm) were cut and stained with Toluidine Blue for examination by light microscopy. Ultra-thin sections (80 nm) were cut and stained with 2% uranyl acetate (v/v; Watson’s modified method) and Reynold’s lead citrate, and visualized using a Hitachi H-7650 transmission electron microscope (Tokyo, Japan). Digital images of coronal and longitudinal serial sections were acquired and analyzed using Image Pro Plus 3.0 software (Media Cybernetics, Rockville, MD, USA). The width of nodes and paranodes of Ranvier were counted in 300–1,000 fibers in corpus callosum sections. The g ratio was calculated from the obtained diameters of fibers and axons. Statistical analyses of the measured g ratios were performed using GraphPad Prism 6 (GraphPad, La Jolla, CA, USA).
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7

Hippocampus Immunostaining for Microglia

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The hippocampus was carefully removed and fixed immediately in 10% neutral buffered formalin, then embedded with paraffin. The paraffin-embedded hippocampus was cut into 4 µm sections for immunofluorescence staining as previously described [30 (link)]. The Iba-1 antibody (Servicebio, Wuhan, China) was stained to detect microglial cells, followed by secondary antibodies of CY-3-conjugated goat anti-rabbit IgG (Servicebio, Wuhan, China). Moreover, the DAPI (Servicebio, Wuhan, China) was used for nuclear staining. The Image-Pro Plus 3.0 software (Media Cybernetics, Silver Spring, MD, USA) was used to mark cells in 6 randomly selected 200× fields [31 (link),32 (link)] and the positive cells were quantified manually [33 (link)].
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8

3D Mapping of Gold Nanorod Biodistribution

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Tumors harvested for biodistribution analysis were fixed in 4% paraformaldehye for 48 h (pH = 7.4) prior to sinking in 30% sucrose. The tumors were frozen in Tissue Tek OCT (Sakura Finetek USA) and sectioned on a Leica CM1510 S cryostat (Leica Biosystems). Sections (10 μm thick) were collected on positively charged slides (Thermo Fisher Scientific, cat. no. 12-550-15) for dark-field imaging. Every 15th section was imaged using a dark-field microscope system (Cytoviva Inc.). Image-Pro Plus 3.0 software (Media Cybernetics; Silver Spring, MD, USA) was then used to tile and preprocess the images to flatten light fluctuations. Finally, open source Reconstruct software36 (Boston University) was used to automatically detect AuNR presence based on saturation, color, and intensity thresholds established using five pixels in AuNR-rich regions and five control pixels. Any continuous pixels that were above these thresholds were assigned as AuNRs. Tumor perimeters were traced by hand,; then AuNR and tumor traces were used to construct 3D projections of AuNR distribution within the tumor.
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9

Quantifying Myocardial Infarct Size

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Infarct size was established by 2, 3, 5-triphenyltetrazolium chloride (TTC, Sigma-Aldrich) staining. The LAD was disengaged after 24 hours of reperfusion, Evans blue dye was injected into the aorta and coronary arteries, the area at risk was determined by staining with 2.0 ml 1% Evans blue. Each heart was excised and cut into 1-mm slices, then slices were incubated in 1 % TTC for 15 min at 37°C. The infarct area (white) and the area at risk (red and white) were determined using an image analyzer (Image-Pro Plus 3.0, Media Cyber-netics, Silver Spring, MD, USA). Infarct size was expressed as a percentage of the risk area volume (%, infarct size/risk area).
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10

Ultrastructural Analysis of LV Papillary Muscle

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For the ultrastructural study (three animals per group), small pieces of the LV
papillary muscle were fixed in Karnovsky's fixative in 0.12 M phosphate, pH 7.2,
for 1-2 hours and were postfixed in 1% osmium tetroxide in 0.1 M phosphate
buffer for 2 hours.25 (link) After
dehydration in a graded ethanol series, the samples were embedded in epoxy
resin. Ultrathin sections were cut from selected areas with a diamond knife,
double-stained with uranyl acetate and lead citrate, and examined using a
Philips EM 301 electron microscope. The LV myocyte CSA was measured using a
compound microscope attached to a computerized imaging analysis system
(Image-Pro Plus 3.0, Media Cybernetics, Silver Springs, MD, USA).
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